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GT16236

CSHL Arabidopsis genetrap mutant lines

Original: GT16236

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT16236

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 423208 [Map]; Strand: c
      • AT5G02140.1 - [+] show detail - Pathogenesis-related thaumatin superfamily protein
        Distance: -176; Region: promoter
    Flanking Genome Sequence: GT16236 - 3-prime edge 
    GTAGAGGTAT TTTACCGACC GTTACCGACC GTTTTCATCC CTACCTATAC 
    AACAATCCAC TTCACCACAC CAATATTAGT CTTGCAACCC AAGTTTCCAC 
    TTCNTTCCTT CGACCACGAC GTCCTCAACA TATTCTTTAT TAATATTCTC 
    TTGAAAACAA CCACAACACA CACAAAAGCA AACTTTAGAA GTGATATATC 
    CCCACACAAC AACAACAACA TCAACAACAA TGACGAAATC TGCAACTCTA 
    TTCCTTCTCT TTCTCACTAT CTCAGCCTTC ACTGGTACGA TATCTCTTCT 
    CCTTCTCGAT AATTTATGAA ATGGGTTTTG TTTCTCGTTT TGATTCCTCT 
    CAATAATAGT GACTTTGTTC TTTTGCAGAT GGAGCTCAGC TTATAATAGT 
    GAATAACTGC CAGGAGAGCA TTTGGCCGGG AATTCTCGGC GGCGGAGGCC 
    AAATCACACC AAGAAACGGC GGATTCCACA TGGGAAGCGG CGAAGAAACC 
    ATCATAGACG TACCGGATAA ATGGTCCGGT CGAATCTGGG GTAGACAAGG 
    CTGCACCTTT AACCAAAACG GTAAAGGCTC ATGCCAAACC GGAGACTGCA 
    ACGACGGCTC TATCAACTGC CAAGGAACCG GCGGTGTACC ACCAGCAACC 
    GTAGTAGAA

AT5G02140.1

Model type
Protein coding
Short Description
Pathogenesis-related thaumatin superfamily protein
Computational Description
Pathogenesis-related thaumatin superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to other organism; LOCATED IN: endomembrane system; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Thaumatin, conserved site (InterPro:IPR017949), Thaumatin, pathogenesis-related (InterPro:IPR001938); BEST Arabidopsis thaliana protein match is: Pathogenesis-related thaumatin superfamily protein (TAIR:AT1G18250.2); Has 1588 Blast hits to 1558 proteins in 178 species: Archae - 0; Bacteria - 37; Metazoa - 56; Fungi - 96; Plants - 1388; Viruses - 2; Other Eukaryotes - 9 (source: NCBI BLink).
Link
InterPro Scan - TAIR