1. Home
  2. Mutant Lines
  3. GT16335

GT16335

CSHL Arabidopsis genetrap mutant lines

Original: GT16335

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT16335

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 1869663 [Map]; Strand: c
      • AT4G03935.1 - [+] show detail - other RNA
        Distance: 0; Region: exon3 (NonCoding)
      • AT4G03930.1 - [+] show detail - Plant invertase/pectin methylesterase inhibitor superfamily
        Distance: -759; Region: promoter
    Flanking Genome Sequence: GT16335 - 5-prime edge 
    AATTTTGACA ACTTTGAATG AATCTTATGC AGCTCTTGTA TCAGGAAACA 
    ATCTCTTCTT TGAGATTTTT AGAATTGGTA AAAGAACAAA AAAGCTTTAG 
    ATGTGCTGCG TAGAGCTGCA ACTAAAGATG GTGGTCATTG CTTTGGATGC 
    TAAATGATGT GGAGAAGAAT CAATTTCCTT CGGATTGTTC TTGAAAAGGG 
    TTTAGTAGTC TGTTTTTGCG GTATGTTTCT TACACTCTTG GCAGTGAAAG 
    CAAGAACTTA TCAGTTCTTC TATTGAGTGA TTCATTGTCT TCCTTTTTTG 
    GTCTCCAGGA TGCTGATGTG ATGTGGTTCA TGAACTAATT TGCTTCTCAA 
    TGCTTTCAAT ATTTAATGCT TTCTTATGAT TTCTTTGTTG AGTTGCATTT 
    GGCTGAGAAC TCTCGTGAGA TGCTTCACAT ACTTACAAAG TCTCAGTCTG 
    CGCGCATGGA ATGGTATTGT ATATCAGAAG ACCATTCAAT ATGGAGATGC 
    TGTAGTAATT GTCGCGTAGG CTTCTTTCTT ATGCTTGTGT CTTTTCTATA 
    TTGTTGGGAA ATCTGCTAGT TTTCCAGTAT ATGGCAATTA TAATATTGTA 
    TAGTTAG

AT4G03930.1

Model type
Protein coding
Short Description
Plant invertase/pectin methylesterase inhibitor superfamily
Computational Description
Plant invertase/pectin methylesterase inhibitor superfamily; FUNCTIONS IN: enzyme inhibitor activity, pectinesterase activity; INVOLVED IN: cell wall modification; LOCATED IN: endomembrane system, cell wall, plant-type cell wall; EXPRESSED IN: flower; CONTAINS InterPro DOMAIN/s: Pectinesterase, active site (InterPro:IPR018040), Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectinesterase, catalytic (InterPro:IPR000070), Pectinesterase inhibitor (InterPro:IPR006501), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: Plant invertase/pectin methylesterase inhibitor superfamily (TAIR:AT1G11590.1); Has 2758 Blast hits to 2712 proteins in 365 species: Archae - 6; Bacteria - 703; Metazoa - 1; Fungi - 192; Plants - 1830; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G03935.1

Model type
Other RNA
Short Description
other RNA
Curator Summary
Unknown gene
Link
InterPro Scan - TAIR