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GT16338

CSHL Arabidopsis genetrap mutant lines

Original: GT16338

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT16338

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 108022 [Map]; Strand: c
      • AT2G01180.1 - [+] show detail - phosphatidic acid phosphatase 1
        Distance: 0; Region: exon2 (CDS)
      • AT2G01180.2 - [+] show detail - phosphatidic acid phosphatase 1
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT16338 - 3-prime edge 
    AACGGTAGAG GATTTTACCG ACCGTTACCG ACCGTTTTCA TCCCTAATCG 
    TGCTTGTGTT TAGAAGCGAC TCTTCCTCCA TGGGACTTTA TAGTGTGAAC 
    ACTAAGATCT ATCTCCTGCA TCCTCCCTCT CTGCGCCTCC TGGTCCTGCC 
    ACCAAAAACA CAAACAATCA TCACAGTCAA CTAAACCTTC TTCTAATTGG 
    ATCTAAACAA ACAATTCATG GCTCTCTAAG AAATACTACT TGAGGGTTAG 
    GGCTTGACAT CTCCGGTTTG GATGATAGTA ACAACGGAAT GCAATTCATT 
    CTATCGGATG AACAAATTGG TTTAGGCAAA CAAAGAACTT TGTCAAAGAC 
    ACGACAACAC TTTGCTCTAC GGATCCAGAC ACTTTTTGTC TGTCTGATTC 
    GTTATGCTAA GCACACCACT GTTTCATTAA CAATGTTTTC GTTGACTCTA 
    TTTAACTACT TTATTTTCAA TGTTAGGATT TTTAAAATGA TAAAGAAAAA 
    AGGAGTAGAA CAGAGAATAG TCGATTGAGG TTACCTGAGA ATTGCGCCNG 
    AATAAGAGAG AAGAGAAAAA CGACCCTATT GTCATCAGAA AGTGAAGATC 
    TCGACTAAGA GATGAGATGA GGTTAAAAAG AAATGTGGAT CTCGAAACTT 
    AGGAGTAAAA CAGAGGAATT GATCTAACGA AGACTATAGA TAAATAGTCC 
    GATGAGGA

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 107935 [Map]; Strand: c
      • AT2G01180.1 - [+] show detail - phosphatidic acid phosphatase 1
        Distance: 0; Region: exon2 (CDS)
      • AT2G01180.2 - [+] show detail - phosphatidic acid phosphatase 1
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT16338 - 5-prime edge 
    CTCGTCATCT TGATTGCCAT CGAGATAGGC TTGAACCTCA TCTCTCCTTT 
    CTACCGCTAC GTGGGAAAAG ACATGATGAC TGACCTCAAG TACCCTTTCA 
    AGGACAACAC CGTACCTATC TGGTCTGTCC CTGTGTACGC TGTGCTTCTT 
    CCCATCATAG TGTTCGTCTG CTTCTACCTG AAGAGGACAT GTGTGTACGA 
    TCTGCACCAC AGCATCCTCG GGCTGCTCTT CGCCGTCTTG ATAACTGGTG 
    TCATCACTGA CTCCATCAAG GTAGCCACCG GACGCCCTCG TCCTAACTTC 
    TACTGGCGCT GCTTCCCCGA CGGCAAAGAG CTGTATGATG CGTTGGGAGG 
    TGTGGTATGC CACGGCAAGG CAGCTGAGGT CAAGGAAGGC CACAAGAGCT 
    TCCCGAGCGG ACACACTTCC TGGTCCTTTG CGGGGCTTAC ATTCCTTTCC 
    CTTTACCTCT CTGGCAAAAT CAAGGCCTTC AACAATGAAG GACATGTGGC 
    TAAACTCTGC CTCGTGATCT TCCCTCTGCT TGCCGCTTGT CTTGTGGGGA 
    TATCTCGTGT GGATGACTAC TGGCACCACT GGCAAGATGT CTTCGCAGGA 
    GCTCTCATTG GCACCCTTGT AGCCGCCTTC TGCTACCGTC AGTTCTACCC 
    CAACCCTTAC CACGAAGAAG GATGGGGTCC CTACGCCTAT TTCAGGGCAG 
    CTCAAGAACG AGGAGTCCCT GTGACCTCCT CCCAAAACGG AGATGCCTTG 
    AGGGCTATGT CTCTGCAGAT GGATTCACAT CTCT

AT2G01180.1

Model type
Protein coding
Short Description
phosphatidic acid phosphatase 1
Curator Summary
Encodes phosphatidate phosphatase. Up-regulated by genotoxic stress (gamma ray or UV-B) and elicitor treatments with mastoparan and harpin. Expressed in roots and leaves.
Computational Description
phosphatidic acid phosphatase 1 (PAP1); FUNCTIONS IN: phosphatidate phosphatase activity; INVOLVED IN: phospholipid metabolic process, response to stress; LOCATED IN: plasma membrane, integral to plasma membrane; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Phosphatidic acid phosphatase/chloroperoxidase, N-terminal (InterPro:IPR016118), Phosphatidic acid phosphatase type 2/haloperoxidase (InterPro:IPR000326); BEST Arabidopsis thaliana protein match is: lipid phosphate phosphatase 3 (TAIR:AT3G02600.1); Has 2118 Blast hits to 2110 proteins in 392 species: Archae - 9; Bacteria - 357; Metazoa - 920; Fungi - 399; Plants - 198; Viruses - 3; Other Eukaryotes - 232 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G01180.2

Model type
Protein coding
Short Description
phosphatidic acid phosphatase 1
Curator Summary
Encodes phosphatidate phosphatase. Up-regulated by genotoxic stress (gamma ray or UV-B) and elicitor treatments with mastoparan and harpin. Expressed in roots and leaves.
Computational Description
phosphatidic acid phosphatase 1 (PAP1); FUNCTIONS IN: phosphatidate phosphatase activity; INVOLVED IN: phospholipid metabolic process, response to stress; LOCATED IN: plasma membrane, integral to plasma membrane; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Phosphatidic acid phosphatase/chloroperoxidase, N-terminal (InterPro:IPR016118), Phosphatidic acid phosphatase type 2/haloperoxidase (InterPro:IPR000326); BEST Arabidopsis thaliana protein match is: lipid phosphate phosphatase 3 (TAIR:AT3G02600.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR