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GT16397

CSHL Arabidopsis genetrap mutant lines

Original: GT16397

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT16397

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 9358454 [Map]; Strand: c
      • AT1G26960.1 - [+] show detail - homeobox protein 23
        Distance: 994; Region: intergenic
      • AT1G26970.1 - [+] show detail - Protein kinase superfamily protein
        Distance: -1228; Region: intergenic
    Flanking Genome Sequence: GT16397 - 5-prime edge 
    CTTTCTCCCT GAGAATCGAA GATAATCCTC TTGCCCTCTT GGCTTTCAGA 
    TTCTGTCGCT TTCTTGTTCC CCAGTCAATT TTTATTCCAC CCGGCGCTAG 
    ACTAATCATC AATGGAAACT TTATCACCTT TTCATTTTCC GAAAAGTTTT 
    TTCTAATGCT ATGCAATTCC ATTTTAACTC GTTTAGTCAT TGTTAATACT 
    CGTATAGGTT TTAATTTACC AGTCAAATGA GGTCTTTTTA CACATATTCG 
    GAAAAAAAAC AAACAAAAAC AAAACCCATA GATTCCATGG GTGTGTGATT 
    GCTAACATTT GTATCGGTGC GATGCAAAAT ACACCACTTA CTAATTAAAA 
    CGCGGCTCCA ATACAAGTTA AACGGTAGAG ATATAATGTA TAAAGAGCAC 
    CGTTACTGAC ACTGCTCGAC GACTCCAAAC TTAGTGCCTT GGTGGTTCAC 
    AACTTTTGTA AGTCATGGTG TGTGTTATTA ATTATTATTA TTTTTTAATT 
    AAAGGTCCGA ATGGCGACTG CGTTTTGCGG TGCGGAAGAA GTGCGGTGCG 
    GTTCAAATAG TAACAAAAAT ATATAAATAC ATATGTATAT GTAGAGATTT 
    TGACACTGTT GCGGTGCGGT TTTGGGTACG GTGTATGTCA CCATTCATAG 
    CCTAAGAGAT GGCTTATATG AATAACAAAT TTGGAGTCGT CGGGCAATGT 
    CAGTGTCGAT GAAAGGGTAA AAAGTGTTGG GTCCATTTTC AGAAAGAGAT 
    GACCACTTTC CAACCCTATT TGTTTGCATC

AT1G26960.1

Model type
Protein coding
Short Description
homeobox protein 23
Curator Summary
Encodes a homeodomain leucine zipper class I (HD-Zip I) protein.
Computational Description
homeobox protein 23 (AtHB23); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: response to gibberellin stimulus, regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Homeobox, conserved site (InterPro:IPR017970), Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057), Helix-turn-helix motif, lambda-like repressor (InterPro:IPR000047), Leucine zipper, homeobox-associated (InterPro:IPR003106), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: Homeobox-leucine zipper protein family (TAIR:AT1G69780.1); Has 11101 Blast hits to 11053 proteins in 666 species: Archae - 0; Bacteria - 4; Metazoa - 8567; Fungi - 242; Plants - 2058; Viruses - 5; Other Eukaryotes - 225 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G26970.1

Model type
Protein coding
Short Description
Protein kinase superfamily protein
Computational Description
Protein kinase superfamily protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation, N-terminal protein myristoylation; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT1G69790.1); Has 119741 Blast hits to 118328 proteins in 4438 species: Archae - 125; Bacteria - 14003; Metazoa - 44350; Fungi - 10257; Plants - 33212; Viruses - 391; Other Eukaryotes - 17403 (source: NCBI BLink).
Link
InterPro Scan - TAIR