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GT16399

CSHL Arabidopsis genetrap mutant lines

Original: GT16399

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT16399

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 13711 [Map]; Strand: c
      • AT4G00026.1 - [+] show detail - FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unk...
        Distance: -352; Region: promoter
      • AT4G00030.1 - [+] show detail - Plastid-lipid associated protein PAP / fibrillin family protein
        Distance: 0; Region: exon1 (CDS)
      • AT4G00040.1 - [+] show detail - Chalcone and stilbene synthase family protein
        Distance: -916; Region: promoter
    Flanking Genome Sequence: GT16399 - 3-prime edge 
    CAGCACAGCG AGCCAAGAGG AAGCTGCTTG AGCTGATCTC CGAGGAGGAT 
    CGAGGTCTGA GAACCCAGAA AGACCCCAAG AAGCGAGATG AAATCGTGAA 
    CGCCATCGAA TCCATGACGG TTATCGGGCG CAGCTCCATC ACCACAGACG 
    ACTCTCTATC TGCTACGTGG CGGCTCTTGT GGACGACGGA GAAGGAACAG 
    TTGTTCATCA TAGAAAAGGC AGGCTTGTTT GGGACGACCG CCGGAGACGT 
    TTTGCAGGTG ATCGATGTGA ATAAACGGAT CCTCAATAAC GTCATCACTT 
    TCCCGCCGGA CGGGGTTTTC TTCGTACGCT CCGATATCGA TATCGCTTCC 
    CCGCAGAGAG TCAATTTCAG GTTCCAAAAA CCACTTCTTC TTCGTACGCT 
    CTGATATCGA AATGTGTAGC ATCATAGCTT AGTTGATAGC GTTTTTGATA 
    TTCAGATTCA ATAGTGCGGT ATTGAGAGGG AAGAACTGGG AGCTCCCACT 
    GCCACCATT

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 13510 [Map]; Strand: c
      • AT4G00026.1 - [+] show detail - FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unk...
        Distance: -151; Region: promoter
      • AT4G00030.1 - [+] show detail - Plastid-lipid associated protein PAP / fibrillin family protein
        Distance: -17; Region: promoter
    Flanking Genome Sequence: GT16399 - 5-prime edge 
    GAGAGCGCGA GCGCCATGTT TGCAAATTGC AATTTCCATG GTTAGGTTGT 
    TGCACGAAGA AGAAGAAGAG ATACTCTGTT ATTTGGGTTT CTTTTCTAAA 
    AAGCCCATTT GGGTTTTATT TGCTTTATCT CATGAGACTA AGCCCAAGCC 
    CAAGGAAATA GCTTGCACGT GCGCGTCACG TGTCTACGAT AAAACCCCAG 
    CAACGGCGAG CGGCTTTGCC TTGCTCATTC AACCTCGCTC GTCGTCGTCG 
    TCGTCTCCAC TTCGATTTTT CAATCAGTAA TATTGGTGGT TCAGAGATGA 
    TGATGATGAA TCTTTTAAGG AGATCAGCGA TAGCCATCGG CCGCCAATCA 
    AAATCGAAAC TGGCGTCGTT TTCCTCCGCT ACACAACCTT GTTCCGGAAT 
    CCCAAAATCG GTAAGGCTTT CGTATTTCAT CTCCACTCGA

AT4G00026.1

Model type
Protein coding
Computational Description
FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Mitochondrial inner membrane translocase complex, subunit Tim21 (InterPro:IPR013261); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00030.1

Model type
Protein coding
Short Description
Plastid-lipid associated protein PAP / fibrillin family protein
Computational Description
Plastid-lipid associated protein PAP / fibrillin family protein; FUNCTIONS IN: structural molecule activity; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Plastid lipid-associated protein/fibrillin (InterPro:IPR006843); Has 184 Blast hits to 184 proteins in 36 species: Archae - 0; Bacteria - 11; Metazoa - 0; Fungi - 0; Plants - 167; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00040.1

Model type
Protein coding
Short Description
Chalcone and stilbene synthase family protein
Computational Description
Chalcone and stilbene synthase family protein; FUNCTIONS IN: transferase activity, transferring acyl groups other than amino-acyl groups, catalytic activity, acyltransferase activity; INVOLVED IN: phenylpropanoid biosynthetic process, biosynthetic process, metabolic process; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Chalcone/stilbene synthase, N-terminal (InterPro:IPR001099), Thiolase-like (InterPro:IPR016039), Polyketide synthase, type III (InterPro:IPR011141), Thiolase-like, subgroup (InterPro:IPR016038), Chalcone/stilbene synthase, C-terminal (InterPro:IPR012328); BEST Arabidopsis thaliana protein match is: Chalcone and stilbene synthase family protein (TAIR:AT1G02050.1); Has 5683 Blast hits to 5679 proteins in 1391 species: Archae - 0; Bacteria - 1882; Metazoa - 0; Fungi - 67; Plants - 3528; Viruses - 0; Other Eukaryotes - 206 (source: NCBI BLink).
Link
InterPro Scan - TAIR