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GT16400

CSHL Arabidopsis genetrap mutant lines

Original: GT16400

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT16400

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 30346977 [Map]; Strand: c
      • AT1G80740.1 - [+] show detail - chromomethylase 1
        Distance: 0; Region: exon20 (3UTR)
      • AT1G80745.1 - [+] show detail - Transcription factor TFIIIC, tau55-related protein
        Distance: -449; Region: promoter
    Flanking Genome Sequence: GT16400 - 3-prime edge 
    GGTAGAGGTT TTTACCGACC GTTACCGACC GTTTTCATCC CTAATTGTTG 
    GTTTATCTTT GACTTTATAA TCATTTGGAA CCATTTTATT TCTTATGATT 
    TTTAATCTCA AGATTTCAAA TTCTATTGCG TAGACTTCAA TCCTCCGTGA 
    TGCCATCCAA CAAGAATTAA GACCAAGCAA AAGACAGACA AAACCTGTTA 
    TTGAGCATCC GAGGTGCTAG GCACGTCCGT GATCTCTCGA CGAACATTGG 
    TTCGATTTTG CGTAATTCAG TTACCACCGA CCGACCGAAA CTCTGGTCAA 
    TGATCACCAC TTACCAGCTT TTATTAATGT TATTCATTCA TTCGCAAAAG 
    CTAAGTAAAT TCGAAGGCAG TTAGGCCCAC AAGCCCATAT AATGGTGAAA 
    GATTTTGGTT CACCCAAATA ATGTCCCCAC TCCTTCGGTT GGGCTTTTAC 
    GTTATAATAT TCGGCCCAAA TTTGATATCT CATAACAGAG CAAATTTTTC 
    ACATAGAAGA AGCAGAGAAA CCAATTGATC TACTTTTTTT TTTTTTTGGG 
    CCCCCCCCCC CCAAAAGGGG GGGTCCTCAA TCCCCCCCCT AAAAAAAGGG 
    TTTCAAATTT TCCCCAAAAT TTGAAGGGAA AAAAAAAAAG GGGGGAACCT 
    TTCCCCACAA AAATTTTTTT TTTAAAAAAA GAAAAAAAGA AAATTTTTGG 
    GACCAAACCC CCTTCAAAAA

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 30346914 [Map]; Strand: c
      • AT1G80740.1 - [+] show detail - chromomethylase 1
        Distance: 0; Region: exon20 (3UTR)
      • AT1G80745.1 - [+] show detail - Transcription factor TFIIIC, tau55-related protein
        Distance: -512; Region: promoter
    Flanking Genome Sequence: GT16400 - 5-prime edge 
    CTTTCTCCCT GCCAACATAA AGAGCTAACA GTTTAAGCCG CCATTGTTTG 
    AGCATATAGC TCTTGATAAC CCAAAAAAGT TAAAAGAAAG TCTAGAAAAT 
    GAAGTATGAT TCCTGAAGAT AGTTTCATCA TGACGACTTG ATGGAGACTG 
    TCAATCAGAT TTGATCCTTT GGCCTGCATG CATTCGGGAT ACTTGAATGG 
    CAGCTTGATT ACTGGTTCAT CATCCGTCAG TCCTTGACTC GCCATACCAA 
    AGGCATATCC TAATGCAACC CCTACAGGAA CTGCCACAGC ATTCCCAACT 
    TGGATGTACC TACAAAATTT AGATTCAAAC CCAGTTTTTA CATACATTAG 
    GATCTCCAGT TCAAAAACAA TCATATACAT AGATAGAAAA GCAGCAAGAA 
    CCAAGGACTT ACTTTTCCTT AATTGTTCCA CAGAGCTTGT AACAATCAGG 
    GAACCCCTGT AATCTCGCAT TGTCACGAAC AGACAACACA CGGTTTTGCA 
    TTGGATGGAT TACACACTGC ATCAACCAGT TTTAATAAAC CAGCCACTAG 
    AGAATTCTAA GTGGAACGTA CCCAGACACA TGGGAAATGA AAGCAAAAGG 
    GCTTACCTGG TTGTGAGGTT CAGCCCTTGT CACAACAGTG TTAACAATTT 
    CATCACCCCA AAGTCTACCA AAC

AT1G80740.1

Model type
Protein coding
Short Description
chromomethylase 1
Curator Summary
ecotype Kl-0 chromomethylase (CMT1). A plant line expressing an RNAi construct directed against DMT4 has reduced agrobacterium-mediated tumor formation.
Computational Description
chromomethylase 1 (CMT1); FUNCTIONS IN: chromatin binding, DNA binding; INVOLVED IN: DNA mediated transformation, DNA methylation; LOCATED IN: chromatin, nucleus; CONTAINS InterPro DOMAIN/s: Chromo domain subgroup (InterPro:IPR017984), DNA methylase, C-5 cytosine-specific (InterPro:IPR001525), Chromo domain-like (InterPro:IPR016197), Bromo adjacent homology (BAH) domain (InterPro:IPR001025), Chromo domain (InterPro:IPR000953); BEST Arabidopsis thaliana protein match is: chromomethylase 3 (TAIR:AT1G69770.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G80745.1

Model type
Protein coding
Short Description
Transcription factor TFIIIC, tau55-related protein
Computational Description
Transcription factor TFIIIC, tau55-related protein; CONTAINS InterPro DOMAIN/s: Transcription factor TFIIIC, tau55-related (InterPro:IPR019481); BEST Arabidopsis thaliana protein match is: Transcription factor TFIIIC, tau55-related protein (TAIR:AT3G15420.1); Has 31 Blast hits to 31 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 31; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR