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GT16496

CSHL Arabidopsis genetrap mutant lines

Original: GT16496

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT16496

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 12465777 [Map]; Strand: c
      • AT2G29010.1 - [+] show detail - pseudogene, receptor protein kinase, contains a protein kinase domain (PS5001...
        Distance: 0; Region: exon1 (NonCoding)
    Flanking Genome Sequence: GT16496 - 3-prime edge 
    AACGGTAGAG GTATTTTACC GACCGTTACC GACCGTTTTC ATCCCTATTT 
    ACAAGTCTTG AAATTTTACA TTTTTCGTTT TCTCTTCTAT ATATGCCACA 
    TGATTTTTAT GTCGCCTCTT ACCAGAATTC ATTAACTTGG ATTGCGGGTT 
    ACACCCTGCG GTATCGCCTT ATACCGAACC ATTAACAAAC TTAACATACC 
    TATCCGACGC TAACTTCACC CAAGGTGGTC AAAGTGGAAG AGTCCAAAAG 
    GTTTGGGAAG AAGCTTATCA GCCATTCACA GTTCTAAGAT ACTTTCCGGA 
    TGGAATACGA AACTGCTATA ACTTGAGTGT CACTCCATCC ACAAAATATC 
    TAATCAAAGC TCTCTTTCTC TATGGAAATT ATGACGGGCT TAACAATGCC 
    CCGATATTTG ATCTGTATCT AGGTCCTAAC ATATGGACAA CGGCCGATGT 
    GAAAAGCTCT TTACTTTCTC AAACGGAAGA GATCATACAC GTCTCAAAGT 
    CAAGCTCTTT GGAGATTTGT CTTGTGAAAA CAGGGAAGAC TACACCAATC 
    ATCTCAGCCT TGGAACTAAT ACCTTTGAGA GATGACACTT ACATTACTCA 
    GATTGGATCC TTGAAGCTCT TAACACGCTA TTATGCTAG

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 15247399 [Map]; Strand: c
      • AT5G38195.1 - [+] show detail - Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfa...
        Distance: 70; Region: intergenic
      • AT5G38197.1 - [+] show detail - Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfa...
        Distance: -3625; Region: intergenic
    Flanking Genome Sequence: GT16496 - 5-prime edge 
    TTCCATCCTA CTTTCTCCCT GCCATAAACC CACAATCGTT TTATTGGAAC 
    CAGTCTCAAA AAATTAACAC CACAATTTTT AAGCTTCAAA GATGACATTG 
    AAAACTCCCA ACAACCATCA TCATCACTGA ACTGTTGTTA TATAAGATTA 
    GGATTTATTA TTACTAATAA TGTTTTACAT ATTTATTGAG CTTTAACAAC 
    TAGGATAAGG AATATTACAA ACTTCTAAAA CTTTGCGAGC AACTGGAGAG 
    CTAACAAACG TACTGTATAA GGGATTGTTA ATGTAACCAC ATAAACATTC 
    CTTTTGCTCA ATCAGTTTGT CGCAACAATC TTGAGTTGGT TGTCCTCCTG 
    TGGTCATTGC CGGTAAGCAT GGCATGAGTT CTGTTGGAAT ACATGACGAT 
    GACACTTCTG ATTTGATCAA AATAGGAGAT GACATGACGA CTATCACAAC 
    TGTGATGACC ATTAGTTTCA TGAACTTCAT CTCACTCGA

AT2G29010.1

Model type
Pseudogene
Computational Description
pseudogene, receptor protein kinase, contains a protein kinase domain (PS50011); contains a S-locus glycoprotein family domain (PF00954); contains LRR Leucine Rich Repeat domains; blastp match of 42% identity and 3.1e-185 P-value to GP|9837280|gb|AAG00510.1||AF285172 leaf senescence-associated receptor-like protein kinase {Phaseolus vulgaris}
Link
InterPro Scan - TAIR

AT5G38195.1

Model type
Protein coding
Short Description
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein
Computational Description
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein; FUNCTIONS IN: lipid binding; INVOLVED IN: lipid transport; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Bifunctional inhibitor/plant lipid transfer protein/seed storage (InterPro:IPR016140), Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (InterPro:IPR003612), Plant lipid transfer protein/hydrophobic protein, helical domain (InterPro:IPR013770); BEST Arabidopsis thaliana protein match is: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (TAIR:AT5G38197.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G38197.1

Model type
Protein coding
Short Description
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein
Curator Summary
Encodes a Protease inhibitor/seed storage/LTP family protein
Computational Description
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein; INVOLVED IN: lipid transport; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Bifunctional inhibitor/plant lipid transfer protein/seed storage (InterPro:IPR016140), Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (InterPro:IPR003612), Plant lipid transfer protein/hydrophobic protein, helical domain (InterPro:IPR013770); BEST Arabidopsis thaliana protein match is: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (TAIR:AT5G38195.1); Has 238 Blast hits to 238 proteins in 29 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 238; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR