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GT16523

CSHL Arabidopsis genetrap mutant lines

Original: GT16523

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT16523

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 14666348 [Map]; Strand: c
      • AT2G34760.1 - [+] show detail - pseudogene, tubulin beta chain -related, similar to beta-7 tubulin GI:416149 ...
        Distance: -272; Region: promoter
      • AT2G34770.1 - [+] show detail - fatty acid hydroxylase 1
        Distance: 0; Region: intron1 (5UTR)
    Flanking Genome Sequence: GT16523 - 3-prime edge 
    TTTTACCGAC CGTTACCGAC CGTTTTCATC CCTATATATA TTTGGTGGTG 
    GGTCCTGGAG GGAAATGAGT GAGAGGGAGC TCTGTTCATA CATTCTATGT 
    TTTTAAATGA TTAGTATTTT TCTTTCATCT AATACTTGCT TTTTGTGCTA 
    GGAATTTCGA TTTTTGGGAC TAATTTATCG AGTATATATA ATTGGATAAG 
    TGAGTTTGGT ATTAATATTA AGAGCAATTA GGTTGGTTAT CTTGCCAAAC 
    AGTAGACCCC TGTCGTTTTC TTAGTCATTT AAGAAGTAAT GCTTAAGATT 
    CAGGCCTCTA ATCTGGTTAT GATAGTGAAG AGGATCTGTA AATTTACCTA 
    TACGACCTGT TGAAAAGGAC CTCTGGTGTT TGTTACTATG CGTTTCTGAT 
    CAATATAGAC ATAGTTGGAT C

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 5371435 [Map]; Strand: w
      • AT1G15610.2 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: 0; Region: intron2 (CDS)
      • AT1G15610.1 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: 0; Region: intron2 (CDS)
    Flanking Genome Sequence: GT16523 - 5-prime edge 
    CAAGATACTA GTCTACTCTT CTGGTGCGCA TCTAACTAAA TTTACAATTA 
    TGGCTAAACA ACATAATTTA CCTCTCTAGA ACTAACAAAT GTCCTTTTCC 
    AGGTTATGGC TGGGTCTACT TGCT

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 14666281 [Map]; Strand: c
      • AT2G34760.1 - [+] show detail - pseudogene, tubulin beta chain -related, similar to beta-7 tubulin GI:416149 ...
        Distance: -205; Region: promoter
      • AT2G34770.1 - [+] show detail - fatty acid hydroxylase 1
        Distance: 0; Region: intron1 (5UTR)
    Flanking Genome Sequence: GT16523 - 5-prime edge 
    TCCTACTTTC TCCCTGAATT ATATACAAGT AAACTACCCA AATAAATCAA 
    CTCACAAGTT AACATCAAGG AAACAAAAAA ACACACAGTT CCTAATTGAG 
    TTGAGACACA TAATCTATTA AAGAGAAAAA TGGCTTAACC AAAAGTTCTT 
    TTCAATTGAA TCATTCACTA TTGTTGCAGT GAGAAACAAT GAGGCTCAAG 
    AAATAAATTC ACATGTTTTC GAGACACCTT CCTTTCTAGC AACAATTGAG 
    CATTTTTTAT TTAGCCTTCA ATAACAATGC GTAAACAAAG TTTTAAGATA 
    GTTATGATTC GTTTTTTGAG AGTCAACAAC AAAAATTATC CGATCTAAAC 
    CACTAAACAT CAAATCAATG GAAATCTCAA TGTTTCCAGA AAAATGAAAT 
    CTATCTAGGG AGGAAAGGAA ACAAATACGG ATTCAAGAGA ATAGATTCGA 
    ATAGAAACGA ACCTGATGGA TCTCAGCGAC TCGAGACGGA AGAGAGAATC 
    GCCGAGATTG TGAATGAATC GCCCCGGCCC TGTTTTGGAG GTTTGCGTTG 
    GTGTGTGTGT GAGAATTAGA TAGAGAAAAC AAGGTCGGTG TAATATATCT 
    TCTAGATGGA ATCTGGACCG TTGATTGTGA GAGATGCCTT AGATCTCGGA 
    GGCCAACGAA TCGTCAATAT ATTCAAAAAA AACAACGGCT GTGCCAGGTT 
    GTTGCTCTTT TGGC

AT1G15610.1

Model type
Protein coding
Computational Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G15630.1); Has 129 Blast hits to 129 proteins in 15 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 127; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G15610.2

Model type
Protein coding
Computational Description
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G15630.1).
Link
InterPro Scan - TAIR

AT2G34760.1

Model type
Pseudogene
Computational Description
pseudogene, tubulin beta chain -related, similar to beta-7 tubulin GI:416149 from (Zea mays); blastp match of 47% identity and 3.0e-15 P-value to SP|Q41784|TBB7_MAIZE Tubulin beta-7 chain (Beta-7 tubulin). (Maize) {Zea mays}
Link
InterPro Scan - TAIR

AT2G34770.1

Model type
Protein coding
Short Description
fatty acid hydroxylase 1
Curator Summary
encodes a fatty acid hydroxylase, required for the AtBI-1-mediated suppression of programmed cell death.
Computational Description
fatty acid hydroxylase 1 (FAH1); FUNCTIONS IN: fatty acid alpha-hydroxylase activity, catalytic activity; INVOLVED IN: very long-chain fatty acid metabolic process, negative regulation of programmed cell death; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Fatty acid hydroxylase (InterPro:IPR006694); BEST Arabidopsis thaliana protein match is: fatty acid hydroxylase 2 (TAIR:AT4G20870.1); Has 784 Blast hits to 784 proteins in 354 species: Archae - 0; Bacteria - 388; Metazoa - 105; Fungi - 140; Plants - 78; Viruses - 0; Other Eukaryotes - 73 (source: NCBI BLink).
Link
InterPro Scan - TAIR