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GT16531

CSHL Arabidopsis genetrap mutant lines

Original: GT16531

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT16531

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 17736317 [Map]; Strand: c
      • AT2G42600.1 - [+] show detail - phosphoenolpyruvate carboxylase 2
        Distance: 0; Region: exon9 (CDS)
      • AT2G42600.2 - [+] show detail - phosphoenolpyruvate carboxylase 2
        Distance: 0; Region: exon9 (CDS)
    Flanking Genome Sequence: GT16531 - 3-prime edge 
    TTTACCGACC GTTACCGACC GTTTTCATCC CTACCAAGAG CAAGGCCAAA 
    TGTTGACACT TGGCGTAAGA ATCGAGCAGG CTTCCATCAG CAATAGGACT 
    GTCACCGCAA TCACAGAGCG ACCTGTAACA AAGCTCAAGT GGCTCCGAAA 
    ACTTTGGAAA GAAACGGAAA CAATCAAAGG TTAGAAAATC TTATAATCAA 
    TCAAACAAGA AACAAACAAC AGCTTTGATC TTAGAGTGGT TCAATCCATA 
    TTTTGGTTCT CTTTTGGTTT GGGATTTTCA AATTTAGAAA AATAGTTACC 
    AAATAATCTA TGCATCAGTA TGGTATAGCT TCCATGTTTA ATCAAATACG 
    ATTCTAATTT TCAAAGGAAT TGAAGTTGCA GTTATATGGC TTAAACATCT 
    CTAGTTGATC TGCAAACAGC AAGAAAACAC ACCTGATCCA CACTTGTGAA 
    AACCGCGTCT TCAGGAACGT CCGATACTCC GCTTGACAAT AACTGACGTG 
    CACGTTCACG TGTGTTGTAC AGCTTGTCCC TCACATCTCC AAGAATAGCT 
    CGGTATGGCT CATTCGCACG GATTTGTTTC CAGAATTCTA CATCCATCCA 
    AAAATCGATC ATACATC

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 17736248 [Map]; Strand: c
      • AT2G42600.1 - [+] show detail - phosphoenolpyruvate carboxylase 2
        Distance: 0; Region: exon9 (CDS)
      • AT2G42600.2 - [+] show detail - phosphoenolpyruvate carboxylase 2
        Distance: 0; Region: exon9 (CDS)
    Flanking Genome Sequence: GT16531 - 5-prime edge 
    CCTACTTTCT CCCTGCTCTT GTGAACTTGA TATCCGTCAA GAATCTGAAA 
    GACACTCTGA TGTCTTGGAT GCCATCACGA CGCACTTAGG TATTGGTTCT 
    TACAAAGAAT GGTCGGAGGA TAAAAGACAG GAATGGCTGT TATCTGAGCT 
    AAGCGGGAAA CGCCCTCTCT TTGGACCGGA TCTTCCCAAA ACCGAAGAGG 
    TTGCAGATGT GTTGGACACT TTCAAAGTCA TTTCTGAGCT TCCTTCGGAT 
    AGTTTTGGTG CTTATATTAT CTCAATGGCC ACTGCTCCAT CAGACGTGCT 
    CGCTGTTGAG CTTTTGCAAC GCGAATGCGG GATCACTGAT CCTCTGAGAG 
    TTGTCCCGTT GTTCGAGAAG CTAGCGGATT TAGAATCCGC ACCTGCTGCA 
    GTTGCCCGTC TCTTCTCCAT AGAATGGTAC AGAAACAGGA TCAATGGAAA 
    GCAAGAAGTC ATGATCGGGT ACTCTGACTC GGGCAAAGAT GCTGGTCGTT 
    TATCAGCGGC TTGGCAGTTA TACAAGACTC AAGAAGAGCT CGTGAAGGTG 
    GCAAAAGAAT ACGGAGTCAA GCTGACAATG TTCCACGGAA GAGGTGGGAC 
    CGTTGGACGA GGAGGTGGAC CTACCCATCT TGCTATTTTG TCTCAGCCTC 
    CGGATACCAT TCATGGGCAA TTGAGGGTAA CGGTTCAAGG TGAAGTTATT 
    GAACAGTCTT TCGGAGAAGA GCACTTATGC CTTTAGGACT CTTCAGCGTT 
    TTCACAGGCT GCAACACT

AT2G42600.1

Model type
Protein coding
Short Description
phosphoenolpyruvate carboxylase 2
Curator Summary
Encodes one of four Arabidopsis phosphoenolpyruvate carboxylase proteins.
Computational Description
phosphoenolpyruvate carboxylase 2 (PPC2); FUNCTIONS IN: phosphoenolpyruvate carboxylase activity, catalytic activity; INVOLVED IN: tricarboxylic acid cycle; LOCATED IN: cytosol, apoplast, chloroplast, plasma membrane; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pyruvate/Phosphoenolpyruvate kinase, catalytic core (InterPro:IPR015813), Phosphoenolpyruvate carboxylase, active site (InterPro:IPR018129), Phosphoenolpyruvate carboxylase (InterPro:IPR001449), Phosphoenolpyruvate carboxylase, C-terminal region (InterPro:IPR021135); BEST Arabidopsis thaliana protein match is: phosphoenolpyruvate carboxylase 1 (TAIR:AT1G53310.3); Has 6860 Blast hits to 6799 proteins in 1908 species: Archae - 27; Bacteria - 2656; Metazoa - 4; Fungi - 0; Plants - 1774; Viruses - 0; Other Eukaryotes - 2399 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G42600.2

Model type
Protein coding
Short Description
phosphoenolpyruvate carboxylase 2
Curator Summary
Encodes one of four Arabidopsis phosphoenolpyruvate carboxylase proteins.
Computational Description
phosphoenolpyruvate carboxylase 2 (PPC2); FUNCTIONS IN: phosphoenolpyruvate carboxylase activity, catalytic activity; INVOLVED IN: tricarboxylic acid cycle; LOCATED IN: cytosol, apoplast, chloroplast, plasma membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pyruvate/Phosphoenolpyruvate kinase, catalytic core (InterPro:IPR015813), Phosphoenolpyruvate carboxylase, active site (InterPro:IPR018129), Phosphoenolpyruvate carboxylase (InterPro:IPR001449), Phosphoenolpyruvate carboxylase, C-terminal region (InterPro:IPR021135); BEST Arabidopsis thaliana protein match is: phosphoenolpyruvate carboxylase 1 (TAIR:AT1G53310.3); Has 6860 Blast hits to 6799 proteins in 1908 species: Archae - 27; Bacteria - 2656; Metazoa - 4; Fungi - 0; Plants - 1774; Viruses - 0; Other Eukaryotes - 2399 (source: NCBI BLink).
Link
InterPro Scan - TAIR