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GT16643

CSHL Arabidopsis genetrap mutant lines

Original: GT16643

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT16643

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 20976039 [Map]; Strand: c
      • AT5G51640.1 - [+] show detail - Plant protein of unknown function (DUF828)
        Distance: 0; Region: exon4 (CDS)
    Flanking Genome Sequence: GT16643 - 3-prime edge 
    CGGTAGAGGA TTTTACCGAC CGTTACCGAC CGTTTTCATC CCTACGGAAG 
    AGCTTCAATT ATGCGCTCAT CGGGTTGGTC AAGCTTGAGT TTAGTTACAC 
    CATCTGTAGC AAAACCAAAC GGTTCATTGA ACTGATGGAC CAGCCAAGAT 
    GACCACATCC GAGCTATCAT CACCGATGAT GACCTGAAAT ACCATCTCTG 
    CATCTTCCTG TTCCCACGGT TAACCGGAGT TTCTACCTGA AAACAACAAC 
    ATCATTCAAA AGTTTAATCA TACAGACAAA ACAAACTCTT GGAAAAAGAA 
    AGAAGCTCTA TATAGTGACA CAAAGTATAA GAAAACACTT GCCTGCCAAA 
    GAAGACACAT CATGGACTCC ATCTGATTAC GAGCTACTGA ATCGCCTATA 
    AAAGCTAGTG TCTTGCCTCT CATTAGCTCA AGAAATTTCT TAGCATCAAA 
    ACGCGGAAGA TCACACTGAG ACGGTTTCCA TCTCCAGTTT TCATACCCCT 
    TGTCAGGTCT TCCATTGCCC TGACAGTTTT GCATCTGTGT CAAAAGAGGA 
    CAAGAGTTGT TTGTATACAA CGGTCCCATC GGATCATAAA ACCAGTTACC 
    ATGATATAAA TCACATTCTG CAAAATGGTC AAAGCAAATC AGAAAAGCTT 
    CAGTAAGAAA AGTGATAAAC ACAATTTCAA AAAAATCCTG AGAGAAGACA 
    TGAAGGAGAC AT

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 20975955 [Map]; Strand: c
      • AT5G51640.1 - [+] show detail - Plant protein of unknown function (DUF828)
        Distance: 0; Region: exon4 (CDS)
    Flanking Genome Sequence: GT16643 - 5-prime edge 
    TCGATGTGGT TGTACTTTCA TCAGGTCACT GGTTTGCAAA ACAGTCTGTC 
    TATATTTTAA ATGACGAGAT TGTGGGAGGC CAGTTATGGT GGCCAGACAA 
    ATCAAAACCC GAAAAGATTA ACAACGTCGA AGCATTTGGG ATCTCTGTAG 
    AAACAATCAT AAAGGCAATG GCTAAACACC CAAACTACAC GGGTCTGACC 
    ATCTTACGTA CTTGGTCGCC TGATCATTAT GAAGGCGGTG CGTGGAACAC 
    TGGTGGATCA TGCACAGGTA AAGTAGAGCC GCTTCCTCCT GGGAATTTAG 
    TTACAAACGG GTTCACAGAG ATAATGCACG AGAAGCAAGC AACAGGGTTT 
    CACCGTGCTG TCGCGGATGA TAAGCTCGGG AATAGATCGA AGAAGCTGAA 
    GCTAATGGAT ATCACTGAGG CTTTCGGGTA TCGCCACGAC GGTCATCCTG 
    GTCCATACAG GAGTCCTGAC CCCGAAAAAG ATCACAA

AT5G51640.1

Model type
Protein coding
Short Description
Plant protein of unknown function (DUF828)
Curator Summary
Encodes leaf-senescence-related protein. A member of the TBL (TRICHOME BIREFRINGENCE-LIKE) gene family containing a plant-specific DUF231 (domain of unknown function) domain. TBL gene family has 46 members, two of which (TBR/AT5G06700 and TBL3/AT5G01360) have been shown to be involved in the synthesis and deposition of secondary wall cellulose, presumably by influencing the esterification state of pectic polymers. A nomenclature for this gene family has been proposed (Volker Bischoff & Wolf Scheible, 2010, personal communication).
Computational Description
YELLOW-LEAF-SPECIFIC GENE 7 (YLS7); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF231, plant (InterPro:IPR004253); BEST Arabidopsis thaliana protein match is: TRICHOME BIREFRINGENCE-LIKE 18 (TAIR:AT4G25360.2); Has 1342 Blast hits to 1319 proteins in 31 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 1337; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).
Link
InterPro Scan - TAIR