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GT16645

CSHL Arabidopsis genetrap mutant lines

Original: GT16645

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT16645

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 5938323 [Map]; Strand: w
      • AT4G09350.1 - [+] show detail - Chaperone DnaJ-domain superfamily protein
        Distance: -6171; Region: intergenic
      • AT4G09360.1 - [+] show detail - NB-ARC domain-containing disease resistance protein
        Distance: -1863; Region: intergenic
    Flanking Genome Sequence: GT16645 - 3-prime edge 
    TTTTACCGAC CGTTACCGAC CGTTTTCATC CCTATCAACG AAGACTTCTC 
    TCTCTTCTCT CACCTCTATT TTTCAGAGAG GAAATCATCA AAGTTCTTCT 
    TCCGGCAACG GTAGCTCTTT CAGTGTCTGT TGGCCATCAA TCTATCTGGA 
    ATCATCTGGC TTTCTCAGTA GGGATGTCCA GCTTTCCGTC CGGCGACGTT 
    CGTCTTTATG GCAATGTTTG GTCGGCTTTT GTTCTGACAC CGTCCGTTTC 
    TTTTAACGGC AGTGGTCGGC TACCGTTTGG CATCTGTCGG CTTCCACAAC 
    GGCGGTTGGC TGGCTTGTGT CTAGAGTTTC ATCGTTCGTC TACGGTGTCT 
    CGTCTAGCTT ATGTTTTTTC TCTTAAGCCT TCTTTATATT CGTTTTGATT 
    GGCACTCTTG GGTATCAGTT CTTAGATCTA GAATTGTAAT TCCTTGAACC 
    TCCTTTGTTT AAAGGGCTTG TTTTGTTTTT CAAGCTTATC GATTTCAGTT 
    TTTTAAAAAC AAATCGGAGT TGTGGATGAA AGTTTTTCTA GTCCCTTTGG 
    ATTGAGTTCA ACATAATT

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 5938337 [Map]; Strand: w
      • AT4G09350.1 - [+] show detail - Chaperone DnaJ-domain superfamily protein
        Distance: -6185; Region: intergenic
      • AT4G09360.1 - [+] show detail - NB-ARC domain-containing disease resistance protein
        Distance: -1849; Region: intergenic
    Flanking Genome Sequence: GT16645 - 3-prime edge 
    AAACGGTAGA GGTATTTTAC CGACCGTTAC CGACCGTTTT CATCCCTATC 
    AACGAAGACT TCTCTCTCTT CTCTCACCTC TATTTTTCAG AGAGGAAATC 
    ATCAAAGTTC TTCTTCCGGC AACGGTAGCT CTTTCAGTGT CTGTTGGCCA 
    TCAATCTATC TGGAATCATC TGGCTTTCTC AGTAGGGATG TCCAGCTTTC 
    CGTCCGGCGA CGTTCGTCTT TATGGCAATG TTTGGTCGGC TTTTGTTCTG 
    ACACCGTCCG TTTCTTTTAA CGGCAGTGGT CGGCTACCGT TTGGCATCTG 
    TCGGCTTCCA CAACGGCGGT TGGCTGGCTT GTGTCTAGAG TTTCATCGTT 
    CGTCTACGGT GTCTCGTCTA GCTTATGTTT TTTCTCTTAA GCCTTCTTTA 
    TATTCGTTTT GATTGGCACT CTTGGGTATC AGTTCTTAGA TCTAGAATTG 
    TAATTCCTTG AACCTCCTTT GTTTAAAGGG CTTGTTTTGT TTTTCAAGCT 
    TATCGATTTC AGTTTTTTAA AAACAAATCG GAGTTGTGGA TGAAAGTTTT 
    TCTAGTCCCT TTGGATTGAG TTCAACATAA TTGT

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 9823809 [Map]; Strand: w
      • AT3G26730.1 - [+] show detail - RING/U-box superfamily protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT16645 - 5-prime edge 
    TTCATCCTAC TTTCTCTCTG TCGCACAGAG ATACTAGTTG GTTTATGTTT 
    TATTGTTGGG TTATGGATAC CCATGGACCT TTTTCCTTCT AAACTTAATG 
    TACTAAAACG ACATCGATCT CCTCCTTCTC TCCTCTTCCC TTCTCTCCTC 
    TTCCCTCCTC TCCTCTTTCC CGGATCTCTT CTTCCACCGG AACTCGATTC 
    GCGTCGCATT CTGAATCCTC TCACAATTTC TCCGGTCACT TTAGGGGCAA 
    TGGAATTGAT TATCTGGATC TAGCTTAAGA TATTTACTCT AGGGCTAGGC 
    TGGGTTTTTT TTACCCACCA CAACATCCCT AATTATCTGG ATCTAGCTTA 
    AGATAGGTCT GCAAAACATA GGATAACTTA GTAAGCATAA TTCTCAAAAC 
    ATTAACAAAA GGGGTCAAAG TCAAACTCAA TAAAGCACAC ATGTTTTCAT 
    TACAAACACT ACTAACTAAG CAAATGAAAA GCCAAAAAGA TCATACTATA 
    ACACAAATCG TTTTATATTA A

AT3G26730.1

Model type
Protein coding
Short Description
RING/U-box superfamily protein
Computational Description
RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841); Has 5292 Blast hits to 2238 proteins in 281 species: Archae - 3; Bacteria - 121; Metazoa - 1602; Fungi - 487; Plants - 437; Viruses - 6; Other Eukaryotes - 2636 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G09350.1

Model type
Protein coding
Short Description
Chaperone DnaJ-domain superfamily protein
Computational Description
Chaperone DnaJ-domain superfamily protein; FUNCTIONS IN: heat shock protein binding; INVOLVED IN: protein folding; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Heat shock protein DnaJ, conserved site (InterPro:IPR018253); BEST Arabidopsis thaliana protein match is: Molecular chaperone Hsp40/DnaJ family protein (TAIR:AT1G80030.2); Has 22215 Blast hits to 22211 proteins in 3226 species: Archae - 172; Bacteria - 9488; Metazoa - 3742; Fungi - 1942; Plants - 2004; Viruses - 8; Other Eukaryotes - 4859 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G09360.1

Model type
Protein coding
Short Description
NB-ARC domain-containing disease resistance protein
Computational Description
NB-ARC domain-containing disease resistance protein; FUNCTIONS IN: nucleoside-triphosphatase activity, nucleotide binding, ATP binding; INVOLVED IN: apoptosis, defense response; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS-LRR class) family (TAIR:AT5G48770.1); Has 14633 Blast hits to 11701 proteins in 482 species: Archae - 8; Bacteria - 658; Metazoa - 1518; Fungi - 72; Plants - 12056; Viruses - 4; Other Eukaryotes - 317 (source: NCBI BLink).
Link
InterPro Scan - TAIR