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GT16666

CSHL Arabidopsis genetrap mutant lines

Original: GT16666

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT16666

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 9101729 [Map]; Strand: w
      • AT3G24900.1 - [+] show detail - receptor like protein 39
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT16666 - 3-prime edge 
    TTTTACCGAC CGTTACCGAC CGTTTTCATC CCTACCTGTA GTTGGTCTTG 
    GTCCTTGTGG TCACCACCAG ATTAAAGCTT TTACGCAGTT CAAAAACGAG 
    TTTGATACTC ATGCTTGCAA CCATAGTGAC TCCTTGAATG GGGTGTGGTG 
    CGATAACTCC ACGGGCGCGG TCATGAAGCT ACGACTCAGG GCCTGTCTCA 
    GTGGAACTCT TAAATCTAAC AGCAGCCTCT TCCAGTTTCA TCAGCTTCGT 
    TACCTTTATC TCTCTTACAA CAACTTCACC CCCTCTTCAA TCCCTTCCGA 
    GTTTGGAGTG CTCAACAAAT TAGAGGTTTT GTTTATGTCT ACTGGTGGCT 
    TCCTAGGCCA AGTTCCTTCC TCTTTTAGTA ACCTAAGCAT GCTTTCCGCT 
    TTACTCCTCC ACCATAACGA GCTCACTGGT AGTTTATCGT TTGTGCGGAG 
    TTTACGCAAG CTCACAATTT TAGATGTTTC TCATAATCAC TTTTCTGGAA 
    CTCTTAATCC CAACAGTAGC CTCTTTGAGT TGCACAACCT CGCTTACCTT 
    GATCTCGGTT TCAACAACTT CACCTCCTCT ACACTCCCGT ATGAATTTGG 
    CAATCTCAAC AAACTACAGG CCTTGTTTCT TACCTCTAAT AGCTTCTATG 
    GTCAAGTTCC TCCCACAATT AGTAACCTAA CCCAGTTAAC CGAGTTGAAG 
    CTTCTCTCGA ACGACTTCAC TGGTAGTCTC CCACTTGTAC AAAATCTAAC 
    CAAGCTCTCC ATTCTAGGAC TTTCTGATAA TCACTTCTCT GG

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 9101729 [Map]; Strand: w
      • AT3G24900.1 - [+] show detail - receptor like protein 39
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT16666 - 3-prime edge 
    TTTTACCGAC CGTTACCGAC CGTTTTCATC CCTACCTGTA GTTGGTCTTG 
    GTCCTTGTGG TCACCACCAG ATTAAAGCTT TTACGCAGTT CAAAAACGAG 
    TTTGATACTC ATGCTTGCAA CCATAGTGAC TCCTTGAATG GGGTGTGGTG 
    CGATAACTCC ACGGGCGCGG TCATGAAGCT ACGACTCAGG GCCTGTCTCA 
    GTGGAACTCT TAAATCTAAC AGCAGCCTCT TCCAGTTTCA TCAGCTTCGT 
    TACCTTTATC TCTCTTACAA CAACTTCACC CCCTCTTCAA TCCCTTCCGA 
    GTTTGGAGTG CTCAACAAAT TAGAGGTTTT GTTTATGTCT ACTGGTGGCT 
    TCCTAGGCCA AGTTCCTTCC TCTTTTAGTA ACCTAAGCAT GCTTTCCGCT 
    TTACTCCTCC ACCATAACGA GCTCACTGGT AGTTTATCGT TTGTGCGGAG 
    TTTACGCAAG CTCACAATTT TAGATGTTTC TCATAATCAC TTTTCTGGAA 
    CTCTTAATCC CAACAGTAGC CTCTTTGAGT TGCACAACCT CGCTTACCTT 
    GATCTCGGGT TCAACAACTT CACCTCCTCT ACACTCCCGT ATGAATTTGG 
    CAATCTCAAC AAACTACAGG CCTTGTTTCT TACCTCTAAT AGCTTCTATG 
    GTCAAGTTCC TCCCACAATT AGTAACCTAA CCCAGTTAAC CGAGTTGAAG 
    CTTCT

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 15140780 [Map]; Strand: w
      • AT4G31140.1 - [+] show detail - O-Glycosyl hydrolases family 17 protein
        Distance: -420; Region: promoter
    Flanking Genome Sequence: GT16666 - 5-prime edge 
    ACCGTTACCG ACCGTTTTCA TCCCTACCCA CATGCCCCAG CCTCACATCA 
    AACCATCTTT ATTTCGTAAT AGCTAAATCT TAGACAGGCC AAATCTATCA 
    AATTTTAGAA AGTACTATTC AAAATTAATA CTCTCTCATG TTACTACCAT 
    ACTTGCTGAT TATAATAACT GTAAACTATA ACAAAGATGG CAAACCCAAA 
    TCTATATTTA TGACGGATTA ATTATTTTAA AGCATATATT GATGATTTTT 
    TCTTTATAAA TTATCATGAT TGCCGTATCG CATAACTAAA AGATTTGAGT 
    GGTATTGTGA AGAGCTACTA CAGCTAAGGA AGCAGACAAC ACCTAACGTA 
    GTAAATTAAA ACATTAATGT TTCTCTTTAA GTCCCTTTTT TTTTG

AT3G24900.1

Model type
Protein coding
Short Description
receptor like protein 39
Computational Description
receptor like protein 39 (RLP39); INVOLVED IN: signal transduction, defense response; LOCATED IN: endomembrane system; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat, typical subtype (InterPro:IPR003591), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: receptor like protein 41 (TAIR:AT3G25010.1); Has 100467 Blast hits to 28160 proteins in 1059 species: Archae - 45; Bacteria - 6030; Metazoa - 21147; Fungi - 1159; Plants - 64382; Viruses - 14; Other Eukaryotes - 7690 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G31140.1

Model type
Protein coding
Short Description
O-Glycosyl hydrolases family 17 protein
Computational Description
O-Glycosyl hydrolases family 17 protein; FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: anchored to plasma membrane, plasma membrane, vacuole, anchored to membrane, plant-type cell wall; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: X8 (InterPro:IPR012946), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, family 17 (InterPro:IPR000490), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: O-Glycosyl hydrolases family 17 protein (TAIR:AT5G58090.1); Has 2782 Blast hits to 2712 proteins in 151 species: Archae - 0; Bacteria - 6; Metazoa - 4; Fungi - 39; Plants - 2723; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).
Link
InterPro Scan - TAIR