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GT16674

CSHL Arabidopsis genetrap mutant lines

Original: GT16674

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT16674

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 644572 [Map]; Strand: w
      • AT4G01510.1 - [+] show detail - Arv1-like protein
        Distance: 236; Region: intergenic
      • AT4G01515.1 - [+] show detail - transposable element gene
        Distance: 3120; Region: intergenic
    Flanking Genome Sequence: GT16674 - 3-prime edge 
    TTTTACCGAC CGTTACCGAC CGTTTTCATC CCTACTCAAG ACTCTTTTAA 
    GTGCACAAAA TGTTTTTACT CATTTTCTAT TGCTATCGAT CTTTTGTCTT 
    ATTCAATTAA TGCATCATGC ATATTATTGT CTTCCATTGA TTTATCACAC 
    TTGATGATTT ATGCTGTCTA ACACTTTTCC TAGTTTCCTC TTCTTTGTAC 
    AAATTAGGCG AAATCATTAC TTGTGTCCAA ACTTACTGCA TTTTTAGGGG 
    TTTGTTATAT CATTTTCATT GTAACAGAGT TGCTGAATCA CCCAAAAGAA 
    GTTGGATTGA ACAAAAATTA TATCAAGATA CTACATTTAT TTTTCCAAAC 
    ATATTATCAC AAGTGATTTA GACAAGAGAG TTTAACGACC CTAAAAAAAA 
    TATTATGAGA TCACAAGTTC CTTGCAAGAG AAGATTACAT GACAGTTCCT 
    AAGTGTCCAG AGATCTGATC CACCAAGAAT CTAATTGAGT GTGCAATGAA 
    ACACACTGCT AAGCATCTGC TCGTTGCTGA TTCAGTCATC ACTAGTAAAA 
    TCATGAGTAA ATAAACAAAA ACGAAAAAGC ATGTCAGGTA TAAGATCGAT 
    AAATCTATGC ACAACCTAAG GCAGATTCAA AGATTCTGAC CTTTAAGAGC 
    AACTGCGTTT GAGGTTAAAA CGAGCATATC TACGATGAAG ATCACAGAAA 
    CCGGGAATTC CCAGACCTGT AACCAGAGTA TTATTAAAGA CTTATCACAT 
    TTTAGCATTT ACAGACCTAT ATCTACTTC

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 644570 [Map]; Strand: w
      • AT4G01510.1 - [+] show detail - Arv1-like protein
        Distance: 234; Region: intergenic
      • AT4G01515.1 - [+] show detail - transposable element gene
        Distance: 3122; Region: intergenic
    Flanking Genome Sequence: GT16674 - 3-prime edge 
    TTACCGACCG TTACCGACCG TTTTCATCCC TACTCAAGAC TCTTTTAAGT 
    GCACAAAATG TTTTTACTCA TTTTCTATTG CTATCGATCT TTTGTATTAT 
    TCAATTAATG CATCATGCAT ATTATTGTCT TCCATTGATT TATCACACTT 
    GATGATTTAT GCTGTCTAAC ACTTTTCCTA GTTTCCTCTT CTTTGTACAA 
    ATTAGGGGAA ATCATTACTT GTGTCCAAAG TTACTGCATT TTTAGGGGTT 
    TGTTATATCA TTTTCATTGT AACAGAGTTG CTGAATCACC CAAAAGGAGT 
    TGGATTGAAC AAAAATTATA TCAAGATACT ACATTTATTT TTCTAAACAT 
    ATTATCACAA GTGATTTAGA CAAGAGAGTT TAACGACCCT AAAAAAAATA 
    TTATGAGATC ACAAGTTCCT TGCAAGAGAA GATTACATGA CAGTTCCTAA 
    GTGTCCAGAG ATCTGATCCA CCAAGAATCT AATTGAGTGT GCAATGAAAC 
    ACACTGCTAA GCATCTGCTC GTTGCTGATT CAGTCATCAC TAGTAAAATC 
    ATGAGTAAAT AAACAAAAAC GAAA

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 5938214 [Map]; Strand: c
      • AT4G09350.1 - [+] show detail - Chaperone DnaJ-domain superfamily protein
        Distance: -6062; Region: intergenic
      • AT4G09360.1 - [+] show detail - NB-ARC domain-containing disease resistance protein
        Distance: -1972; Region: intergenic
    Flanking Genome Sequence: GT16674 - 5-prime edge 
    AAAGTTCTTC ATCCGGCAAG GAAGCTCTTT CAGTGTCTGA AGGCCATCAA 
    TCTATCTGGA ATCATCAGGC TTTCTCAGTA GGGATGTCCA GCTTTCCGTC 
    CG

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 644713 [Map]; Strand: w
      • AT4G01510.1 - [+] show detail - Arv1-like protein
        Distance: 377; Region: intergenic
      • AT4G01515.1 - [+] show detail - transposable element gene
        Distance: 2979; Region: intergenic
    Flanking Genome Sequence: GT16674 - 5-prime edge 
    AATATGAACG TTGTGAAACG GTAACATTTT TTTGACCGTT TGAAACTTTG 
    AATTAAGAGA GAAACTAAGA TTATTTACAC TCTATAAATA CTACTACTCC 
    TTTCTTCGGA CAGACACCTG AATCTTACAA ATGTTAAAAA CACTGTTTTT 
    TTTAATTCTC TTATTAGTTC AGC

AT4G01510.1

Model type
Protein coding
Short Description
Arv1-like protein
Computational Description
ARV2; CONTAINS InterPro DOMAIN/s: Arv1-like protein (InterPro:IPR007290); BEST Arabidopsis thaliana protein match is: Arv1-like protein (TAIR:AT1G01020.1); Has 318 Blast hits to 318 proteins in 158 species: Archae - 0; Bacteria - 0; Metazoa - 112; Fungi - 116; Plants - 41; Viruses - 0; Other Eukaryotes - 49 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G01515.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
non-LTR retrotransposon family (LINE), has a 1.1e-18 P-value blast match to GB:AAB41224 ORF2 (LINE-element) (Rattus norvegicus)
Link
InterPro Scan - TAIR

AT4G09350.1

Model type
Protein coding
Short Description
Chaperone DnaJ-domain superfamily protein
Computational Description
Chaperone DnaJ-domain superfamily protein; FUNCTIONS IN: heat shock protein binding; INVOLVED IN: protein folding; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Heat shock protein DnaJ, conserved site (InterPro:IPR018253); BEST Arabidopsis thaliana protein match is: Molecular chaperone Hsp40/DnaJ family protein (TAIR:AT1G80030.2); Has 22215 Blast hits to 22211 proteins in 3226 species: Archae - 172; Bacteria - 9488; Metazoa - 3742; Fungi - 1942; Plants - 2004; Viruses - 8; Other Eukaryotes - 4859 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G09360.1

Model type
Protein coding
Short Description
NB-ARC domain-containing disease resistance protein
Computational Description
NB-ARC domain-containing disease resistance protein; FUNCTIONS IN: nucleoside-triphosphatase activity, nucleotide binding, ATP binding; INVOLVED IN: apoptosis, defense response; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS-LRR class) family (TAIR:AT5G48770.1); Has 14633 Blast hits to 11701 proteins in 482 species: Archae - 8; Bacteria - 658; Metazoa - 1518; Fungi - 72; Plants - 12056; Viruses - 4; Other Eukaryotes - 317 (source: NCBI BLink).
Link
InterPro Scan - TAIR