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GT16675

CSHL Arabidopsis genetrap mutant lines

Original: GT16675

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT16675

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 383833 [Map]; Strand: w
      • AT2G01840.1 - [+] show detail - transposable element gene
        Distance: -5386; Region: intergenic
      • AT2G01850.1 - [+] show detail - endoxyloglucan transferase A3
        Distance: -1366; Region: intergenic
    Flanking Genome Sequence: GT16675 - 3-prime edge
    TTTACCGACC GTTACCGACC GTTTTCATCC CTAGTTAGCC GCCCCAATAC 
    GCCGTCCCTG ATGTAATTCT CCAAAATACC CTTCTCCGTT AAATAAATTC
    ACGACCACCG TCCAATGGTA TTTCCGTAAA TAAGGCTGAC ATTATGAGGA
    CAATAAGACA TTTGTCCAAC GGTAAACAAT TTTTGAAAAA GTCGCGGCTC
    CGTTAAATGA GAATCGCGTG AAGGAAACGC GGGTTTTAAA TAAAGACACG
    TGGTGAGTAA TATGTGGAGC GGGTGGATTT TAAAACGCTA ACGTTTGGCG
    ACGCGGCTCT GTGCTGCCAA TGAATGCAAC CCCAAAAACG GTGTCGTACT
    GGTTACTGTT ACCTGTGCCG GAGTTAATTA GCAGCGTTAA GAAAGATGAG
    TCCACGTCAG CACATAACAA CCGTTAAAAT CTCTACTGGG CCCACTAACA
    TATCTAGTAA GCAGACACGC AGTTAACAGC AATGTTAACG CCGTTAACTC
    CATTTTTGGT AACAGTCGTG TCAGAGAAGT CCAATACTTC ACGCGTAAAT
    AGATACTAAT AATTAGTACT ACATGTAAAA TCAGTATCAG TATTATTTTA
    ATTTCATATT TGGTGGATGG GAAAAAATAA TTTCATTGAG GTCACAACGG
    TCATCGTCCC AACAAGTTTG ATAGGCGTAT TTTAGTGTAA CGTGGTGCGA
    GGTTAATTAG CATAAGCACA TGTGGAATCT AGTAGTAATT AGA
  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 383834 [Map]; Strand: w
      • AT2G01840.1 - [+] show detail - transposable element gene
        Distance: -5387; Region: intergenic
      • AT2G01850.1 - [+] show detail - endoxyloglucan transferase A3
        Distance: -1365; Region: intergenic
    Flanking Genome Sequence: GT16675 - 3-prime edge
    TTTTACCGAC CGTTACCGAC CGTTTTCATC CCTAGTTAGC CGCCCCAATA 
    CGCCGTCCCT GATGTAATTC TCCAAAATAC CCTTCTCCGT TAAATAAATT
    CACGACCACC GTCCAATGGT ATTTCCGTAA ATAAGGCTGA CATTATGAGG
    ACAATAAGAC ATTTGTCCAA CGGTAAACAA TTTTTGAAAA AGTCGCGGCT
    CCGTTAAATG AGAATCGCGT GAAGGAAACG CGGGTTTTAA ATAAAGACAC
    GTGGTGAGTA ATATGTGGAG CGGGTGGATT TTAAAACGCT AACGTTTGGC
    GACGCGGCTC TGTGCTGCCA ATGAATGCAA CCCCAAAAAC GGTGTCGTAC
    TGGTTACTGT TACCTGTGCC GGAGTTAATT AGCAGCGTTA AGAAAGATGA
    GTCCACGTCA GCACATAACA ACCGTTAAAA TCTCTACTGG GCCCACTAAC
    ATATCTAGTA AGCAGACACG CAGTTAACAG CAATGTTAAC GCCGTTAACT
    CCATTTTTGG TAACAGTCGT GTCAGAGAAG TCCAATACTT CACGCGTAAA
    TAGATACTAA TAATTAGTAC TACATGTAAA ATCAGTATCA GTATTATTTT
    AATTTCATAT TTGGTGGATG GGAAAAAATA ATTTCATTGA GGTCACAACG
    GTCATCGTCC CAACAAGTTT GATAGGCGTA TTTTAGTGTA AC

AT2G01840.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
non-LTR retrotransposon family (LINE), has a 9.6e-34 P-value blast match to GB:NP_038607 L1 repeat, Tf subfamily, member 9 (LINE-element) (Mus musculus)
Link
InterPro Scan - TAIR

AT2G01850.1

Model type
Protein coding
Short Description
endoxyloglucan transferase A3
Curator Summary
EXGT-A3 has homology to xyloglucan endotransglucosylases/hydrolases (XTHs). Mutants in this gene show a lesion mimic phenotype associated with leaf maturation and a reduction in the number of tertiary veins. Individual tracheary elements in the mutants are shorter, but phloem transport activity is not severely affected. EXGT-A3 plays a role in xyloglucan degradation in the differentiating tracheary elements of rosette leaves.
Computational Description
endoxyloglucan transferase A3 (EXGT-A3); FUNCTIONS IN: hydrolase activity, acting on glycosyl bonds, xyloglucan:xyloglucosyl transferase activity; INVOLVED IN: phloem or xylem histogenesis; LOCATED IN: endomembrane system, cell wall, apoplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Xyloglucan endotransglucosylase/hydrolase (InterPro:IPR016455), Xyloglucan endo-transglycosylase, C-terminal (InterPro:IPR010713), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320), Concanavalin A-like lectin/glucanase (InterPro:IPR008985), Glycoside hydrolase, family 16 (InterPro:IPR000757); BEST Arabidopsis thaliana protein match is: xyloglucan endotransglucosylase/hydrolase 28 (TAIR:AT1G14720.1); Has 2101 Blast hits to 2091 proteins in 291 species: Archae - 0; Bacteria - 238; Metazoa - 0; Fungi - 449; Plants - 1341; Viruses - 0; Other Eukaryotes - 73 (source: NCBI BLink).
Link
InterPro Scan - TAIR