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GT16684

CSHL Arabidopsis genetrap mutant lines

Original: GT16684

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT16684

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 571325 [Map]; Strand: w
      • AT4G01390.1 - [+] show detail - TRAF-like family protein
        Distance: 0; Region: intron2 (CDS)
    Flanking Genome Sequence: GT16684 - 3-prime edge 
    GGTAGAGGTA TTTTACCGAC CGTTACCGAC CGTTTTCATC CCTTATGCAT 
    GCTTATTGAC ATACAAAAGA AAACAAAGAT GGTCATGATC ATCCTCTTAA 
    CGACTTGATT GGTATGATTG GTAACAGGAA ACTCTCTGTG CACCCAAATG 
    GGCATACAAA TGCTAAGGGG ACTCATTATG TCTCCCTCTA CTTAATGAAT 
    CAAGCTCCGG TATATGATAC GCTTACATAT GAGCTTCTTG CCGTCAGTCA 
    ACTTGAGCCA AAATGGCACA CTCACGGTCT CTCTCACTCT CTCTCTCTCT 
    CTCTCT

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 571384 [Map]; Strand: w
      • AT4G01390.1 - [+] show detail - TRAF-like family protein
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: GT16684 - 5-prime edge 
    ACTTTCTCCC TGTGCATAAT AACAAGATTA AAAAAAGCTT CACCATTTGT 
    GACCAGCGAG ATCGAAAACA GAGGATTCGA CCTTTTCGAT TCCATGCTTT 
    CTGAGTAAAG AGAAATGGTC TATCTTGAAC ATGTGAGCTG TTGCGTGACG 
    TACTTTGAAC AGTCTCACCA TTTCTGTCAA GAATGAGAAA ATTATTAAAA 
    CTTGAAACTC ATAATGATAT AAAGAGATCA TCAGACACAA CATGAGTTAT 
    GTTTTTACCT TCAAGCGAGA TTGGTCGGGA CATTGTAAGA AGCTGCAAAT 
    GATTTAGTAC TGATTCTTGT TAGGTGTAAA GAGACTTGTA CATATATATC 
    TTGAAGATGC AAGTCTATTT ATACAAGGAC AAGAGTTGTC TTTATTTATT 
    TGTTGGGATC CCATGTTTTG CTCATCTCTC TGTTTTGCCC CCAACATTTA 
    TCGAATCGAA CAAAACATTT TTTTTTTTGT TTTGGGAAAT TGACCAAAGC 
    ATCAATATGG AACCCTTTTT ATTTATCCGC CACATTGGGG CATATGTTCG 
    AAAAAATCGC CCTAATTTCC CACCTCAAAA AAATACTTAA ATTTTA

AT4G01390.1

Model type
Protein coding
Short Description
TRAF-like family protein
Computational Description
TRAF-like family protein; CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), MATH (InterPro:IPR002083); BEST Arabidopsis thaliana protein match is: TRAF-like family protein (TAIR:AT4G00780.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR