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GT16685

CSHL Arabidopsis genetrap mutant lines

Original: GT16685

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT16685

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 3353724 [Map]; Strand: c
      • AT3G10710.1 - [+] show detail - root hair specific 12
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: GT16685 - 3-prime edge 
    GTAGAGGTAT TTTACCGACC GTTACCGACC GTTTTCATCC CTATGCACAA 
    CGCCAATTCT ACCGTGAATG CACCATTATC GGAACAGTAG ATTTCATCTT 
    TGGTAACTAA GCTTCAGTTC TCCAAAGCTG CCGGATTCTC CCTCGCCGAC 
    CAATGAAAGG ACAACAAAAC ACAATCACGG CTCAAGGACG TACTGATCCG 
    AACATGAACA CAGGAATCTC GATTCACCGT TGTAACATCT CTCCACTCGG 
    TGACCTAACC GATGTTATGA CGTTTCTAGG TCGACCATGG AAGAATTTCT 
    CGACGACGGT TATAATGGAC TCGTATTTGC ATGGTTTTAT TGACCGGAAA 
    GGCTGGTTAC CCGACCGGAT CGTATCGGTA T

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 3353659 [Map]; Strand: c
      • AT3G10710.1 - [+] show detail - root hair specific 12
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: GT16685 - 5-prime edge 
    CTTTCTCCCT TGTGCATGAA CGTAAAGCGT GTCTTGGTAT GCGTTCATCG 
    TGCAACGGTA AAATGCTGTG AGATCTGCGC TTACCATTAG AGCAACAGCT 
    TGATGTTTGG ATGGACCAGC TGTGTTGATG AAGCCCATGT CTCTTGCCAT 
    AAACCCTTTT CCAAACACAG CTGCAGAAAA CAGAGCATGT CAAAAACCGA 
    TTTCTTGGGT TATAAGTAAT GATATTATGT TCGGTTTTCT AGTTGATATT 
    ATTTCAGAAT AACGTTACCA ATCATAATTC TAAACATTAT ATCTTTGATT 
    TATGAGATTA TTTAGTCTAC TTTGATATTA TTAGGCCATA ATTAAATTAA 
    TGAAACAACC AAGTCGTGCT ATTTCGAAAT CCTCTGTTTC CAAAAGTAAA 
    CAAGAAGAAA AACAAAAACA GAGAGAGGTT TACCGAATGT GGCGGTCTTA 
    AAAGTGGGAG TTCCATCGAT GACATTAAGT CTACCAGAGA CAATACTCTT 
    GCTCTCGCCA TCTCCAACCA CAATAACATT CCACATC

AT3G10710.1

Model type
Protein coding
Short Description
root hair specific 12
Computational Description
root hair specific 12 (RHS12); FUNCTIONS IN: enzyme inhibitor activity, pectinesterase activity; INVOLVED IN: cell wall modification; LOCATED IN: cell wall, plant-type cell wall; EXPRESSED IN: root hair, flower; CONTAINS InterPro DOMAIN/s: Pectinesterase, active site (InterPro:IPR018040), Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectinesterase, catalytic (InterPro:IPR000070), Pectinesterase inhibitor (InterPro:IPR006501), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: Plant invertase/pectin methylesterase inhibitor superfamily (TAIR:AT5G04960.1); Has 2830 Blast hits to 2766 proteins in 319 species: Archae - 6; Bacteria - 575; Metazoa - 1; Fungi - 191; Plants - 2032; Viruses - 0; Other Eukaryotes - 25 (source: NCBI BLink).
Link
InterPro Scan - TAIR