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GT16707

CSHL Arabidopsis genetrap mutant lines

Original: GT16707

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT16707

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 28341338 [Map]; Strand: w
      • AT1G75500.1 - [+] show detail - Walls Are Thin 1
        Distance: -1097; Region: intergenic
      • AT1G75510.1 - [+] show detail - Transcription initiation factor IIF, beta subunit
        Distance: 5717; Region: intergenic
    Flanking Genome Sequence: GT16707 - 5-prime edge 
    CCCTGATTTT TTGTATATCT AAAATCATTT AATTCTGAAA ATCAAAAAGG 
    TAAAAATAAC AATAGAAAAA GCACAAAATA TATCATTATT TACGACTCTA 
    TTCCTCAATT TGCACTCACT ATCGTAGACA TTATAATGGT TTTAGTTTGT 
    CCTTTCCTTT GATATTTATT GAGCAGCATG GCATTGCTAC TAATTATTAC 
    TTGTACAGTA TAGTCTTCAG GAGAATAACA CTCTTAATTA TAAATGTACG 
    ACATTTCGTT TTAACATCTT TTATTTACTT TCTTTTTTGG TAAATATATT 
    TCTTGATTTT ATTTATGTTA CATAATTAAT TTTGTAGGGA CGAGCCCCAC 
    GCGCACTGCC GAACCGTGAG ACCCACAGTA CCTCTTATTT CGCAGGCACA 
    CCCACACGAT CAATATTTAT GTACACGCTT ACACCAATAT TATTATCTGT 
    ATTTGTCCTC AATTATTTTA GTTTTATTTT TCTTGTTAAT TTATTTTAGT 
    TCTATTTTTT TGTGCTCATC GAATAGACGT GTGTAAAGTG TTTTCCAATA 
    GTCAAATACA TTTGTATCCC TATAGAATAG AATCATCGAA AATTTTATGG 
    TTGCTTGCTT GTATATGGCT TT

AT1G75500.1

Model type
Protein coding
Short Description
Walls Are Thin 1
Curator Summary
An Arabidopsis thaliana homolog of Medicago truncatula NODULIN21 (MtN21). The gene encodes a plant-specific, predicted integral membrane protein and is a member of the Plant-Drug/Metabolite Exporter (P-DME) family (Transporter Classification number: TC 2.A.7.3).
Computational Description
Walls Are Thin 1 (WAT1); INVOLVED IN: positive regulation of auxin metabolic process, positive regulation of tryptophan metabolic process, secondary cell wall biogenesis, unidimensional cell growth; LOCATED IN: plant-type vacuole membrane, plasma membrane, membrane; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF6, transmembrane (InterPro:IPR000620); BEST Arabidopsis thaliana protein match is: nodulin MtN21 /EamA-like transporter family protein (TAIR:AT3G53210.1); Has 4164 Blast hits to 4147 proteins in 615 species: Archae - 25; Bacteria - 1869; Metazoa - 6; Fungi - 0; Plants - 1248; Viruses - 0; Other Eukaryotes - 1016 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G75510.1

Model type
Protein coding
Short Description
Transcription initiation factor IIF, beta subunit
Computational Description
Transcription initiation factor IIF, beta subunit; FUNCTIONS IN: RNA polymerase II transcription factor activity, general RNA polymerase II transcription factor activity, catalytic activity, ATP binding, ATP-dependent helicase activity; INVOLVED IN: transcription initiation from RNA polymerase II promoter, transcription from RNA polymerase II promoter; LOCATED IN: mitochondrion, transcription factor TFIIF complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), Transcription Factor IIF, Rap30/Rap74, interaction (InterPro:IPR011039), Transcription initiation factor IIF, beta subunit (InterPro:IPR003196), Transcription initiation factor IIF, beta subunit, subgroup (InterPro:IPR016640); BEST Arabidopsis thaliana protein match is: Transcription initiation factor IIF, beta subunit (TAIR:AT3G52270.1); Has 346 Blast hits to 346 proteins in 152 species: Archae - 0; Bacteria - 0; Metazoa - 130; Fungi - 128; Plants - 70; Viruses - 0; Other Eukaryotes - 18 (source: NCBI BLink).
Link
InterPro Scan - TAIR