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GT16709

CSHL Arabidopsis genetrap mutant lines

Original: GT16709

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT16709

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 107797 [Map]; Strand: w
      • AT2G01180.1 - [+] show detail - phosphatidic acid phosphatase 1
        Distance: 0; Region: exon2 (CDS)
      • AT2G01180.2 - [+] show detail - phosphatidic acid phosphatase 1
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT16709 - 3-prime edge 
    TTTTACCGAC CGTTACCGAC CGTTTTCATC CCTATGTGTA CGATCTGCAC 
    CACAGCATCC TCGGGCTGCT CTTCGCCGTC TTGATAACTG GTGTCATCAC 
    TGACTCCATC AAGGTAGCCA CCGGACGCCC TCGTCCTAAC TTCTACTGGC 
    GCTGCTTCCC CGACGGCAAA GAGCTGTATG ATGCGTTGGG AGGTGTGGTA 
    TGCCACGGCA AGGCAGCTGA GGTCAAGGAA GGCCACAAGA GCTTCCCGAG 
    CGGACACACT TCCTGGTCCT TTGCGGGGCT TACATTCCTT TCCCTTTACC 
    TCTCTGGCAA AATCAAGGCC TTCAACAATG AAGGACATGT GGCTAAACTC 
    TGCCTCGTGA TCTTCCCTCT GCTTGCCGCT TGTCTTGTGG GGATATCTCG 
    TGTGGATGAC TACTGGCACC ACTGGCAAGA TGTCTTCGCA GGAGCTCTCA 
    TTGGCACCCT TGTAGCCGCC TTCTGCTACC GTCAGTTCTA CCCCAACCCT 
    TACCACGAAG AAGGATGGGG TCCCTACGCC TATTTCAAGG CAGCTCAAGA 
    ACGAGGAGTC CCTGTGACCT CCTCCCAAAA CGGAGATGCC TTGAGGGCTA 
    TGTCTCTGCA GATGGATTCA ACATCTCTCG AAAACATGGA ATCTGGCACT 
    TCCACCGCTC CCAGATGATC CTCCTCTCTT ATTATTTGAT TCATTATTTG 
    G

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 107865 [Map]; Strand: w
      • AT2G01180.1 - [+] show detail - phosphatidic acid phosphatase 1
        Distance: 0; Region: exon2 (CDS)
      • AT2G01180.2 - [+] show detail - phosphatidic acid phosphatase 1
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT16709 - 5-prime edge 
    CTACTTTCTC CCTGCGTACA CACATGTCCT CTTCAGGTAG AAGCAGACGA 
    ACACTATGAT GGGAAGAAGC ACAGCGTACA CAGGGACAGA CCAGATAGGT 
    ACGGTGTTGT CCTTGAAAGG GTACTTGAGG TCAGTCATCA TGTCTTTTCC 
    CACGTAGCGG TAGAAAGGAG AGATGAGGTT CAAGCCTATC TCGATGGCAA 
    TCAAGATGAC GAGTATGATC CAATCGTGCT TGTGTTTAGA AGCGACTCTT 
    CCTCCATGGG ACTTTATAGT GTGAACACTA AGATCTATCT CCTGCATCCT 
    CCCTCTCTGC GCCTCCTGGT CCTGCCACCA AAAACACAAA CAATCATCAC 
    AGTCAACTAA ACCTTCTTCT AATTGGATCT AAACAAACAA TTCATGGGCT 
    CTCTAAGAAA TACTACTTGA GGGTTAGGGC TTGACATCTC CGGTTTGGAT 
    GATAGTAACA ACGGAATGCA ATTCATTCTA TCGGATGAAC AAATTGGTTT 
    AGGCAAACAA AGAACTTTGT CAAAGACACG ACAACACTTT GCTCTACGGA 
    TCCAGACACT TTTTGTCTGT CTGATTCGTT ATGCTAATTG CTAAGCACAC 
    CACTGTTTCA TTAACAATGT TTTCGTTGAC TCTATTTAAC TACTTTATTT 
    TCAATGTTAG GATTTTTAAA ATGATAAAGA AAAAAGGAGT AGAACAGAGA 
    ATAGTCGATT GAGGTTACCT GAGAATTGCG CCNGAATAAG AGAGAAGAGA 
    AAAACGACCC TATTGTCATC AGAAAGTGAA GATCTCGACT AAGAGATGAG 
    ATGAGGTTAA AAAGAAATGT GGATCTCGAA ACTT

AT2G01180.1

Model type
Protein coding
Short Description
phosphatidic acid phosphatase 1
Curator Summary
Encodes phosphatidate phosphatase. Up-regulated by genotoxic stress (gamma ray or UV-B) and elicitor treatments with mastoparan and harpin. Expressed in roots and leaves.
Computational Description
phosphatidic acid phosphatase 1 (PAP1); FUNCTIONS IN: phosphatidate phosphatase activity; INVOLVED IN: phospholipid metabolic process, response to stress; LOCATED IN: plasma membrane, integral to plasma membrane; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Phosphatidic acid phosphatase/chloroperoxidase, N-terminal (InterPro:IPR016118), Phosphatidic acid phosphatase type 2/haloperoxidase (InterPro:IPR000326); BEST Arabidopsis thaliana protein match is: lipid phosphate phosphatase 3 (TAIR:AT3G02600.1); Has 2118 Blast hits to 2110 proteins in 392 species: Archae - 9; Bacteria - 357; Metazoa - 920; Fungi - 399; Plants - 198; Viruses - 3; Other Eukaryotes - 232 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G01180.2

Model type
Protein coding
Short Description
phosphatidic acid phosphatase 1
Curator Summary
Encodes phosphatidate phosphatase. Up-regulated by genotoxic stress (gamma ray or UV-B) and elicitor treatments with mastoparan and harpin. Expressed in roots and leaves.
Computational Description
phosphatidic acid phosphatase 1 (PAP1); FUNCTIONS IN: phosphatidate phosphatase activity; INVOLVED IN: phospholipid metabolic process, response to stress; LOCATED IN: plasma membrane, integral to plasma membrane; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Phosphatidic acid phosphatase/chloroperoxidase, N-terminal (InterPro:IPR016118), Phosphatidic acid phosphatase type 2/haloperoxidase (InterPro:IPR000326); BEST Arabidopsis thaliana protein match is: lipid phosphate phosphatase 3 (TAIR:AT3G02600.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR