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GT16719

CSHL Arabidopsis genetrap mutant lines

Original: GT16719

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT16719

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 1416195 [Map]; Strand: c
      • AT4G03210.1 - [+] show detail - xyloglucan endotransglucosylase/hydrolase 9
        Distance: 0; Region: intron1 (CDS)
      • AT4G03210.2 - [+] show detail - xyloglucan endotransglucosylase/hydrolase 9
        Distance: 0; Region: intron1 (CDS)
    Flanking Genome Sequence: GT16719 - 3-prime edge 
    CGGTAGAGGT ATTTTACCGA CCGTTACCGA CCGTTTTCAT CCCTACTGGT 
    AAGTAGATGA AGACAAACCC ATCTCTGTTA AGTTTCCTCT GTTTTTGGTG 
    CCATCTCTGT TTTGTTTCCT CTGTTTTTGT GGGTTAATTA TAATTGAATA 
    TGTTTTTATT TAATTTTTCA GGAGCTGGGT TTGAATCAAG AAGCAAATAC 
    TTGTTTGGTA AAGTCTCTAT CCAGATTAAG CTTGTTGAGG GTGATTCAGC 
    AGGAACAGTC ACTGCTTTCT ACGTACGGAA CAAAACCCAT CTCTTCTTGT 
    TCTGTTTTTA ATCCCCTATT TGATTATTAT GTCTCAAATC TTGAAATGTA 
    ACAATTTTTT TTCTCTTACA GATGTCTTCA GATGGTCCGA ACCACAACGA 
    ATTCGATTTT GAGTTCTTAG GGAACACTAC CGGCGAGCCT TACATAGTCC 
    AGACCAATAT CTACGTGAAC GGAGTTGGAA ACAGAGAACA AAGACTCAAC 
    CTTTGGTTCG ATCCCTCCAC TGAGTTTCAC ACTTACTCAA TCCTCTGGAG 
    TAAACGCAGT GTTGTGTAAG CTCTCTTATA CAAACAAAGT CTCTTCCTTT 
    ATTTGATTAT TGAAGACCCA TTTTAATGAT GTCTTCATTG CAAAT

AT4G03210.1

Model type
Protein coding
Short Description
xyloglucan endotransglucosylase/hydrolase 9
Curator Summary
encodes a member of xyloglucan endotransglucosylase/hydrolases (XTHs) that catalyze the cleavage and molecular grafting of xyloglucan chains function in loosening and rearrangement of the cell wall. Gene is expressed in shoot apex region, flower buds, flower stalks and internodes bearing flowers.
Computational Description
xyloglucan endotransglucosylase/hydrolase 9 (XTH9); FUNCTIONS IN: hydrolase activity, acting on glycosyl bonds, xyloglucan:xyloglucosyl transferase activity; INVOLVED IN: carbohydrate metabolic process, cellular glucan metabolic process; LOCATED IN: endomembrane system, apoplast, cell wall; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Xyloglucan endotransglucosylase/hydrolase (InterPro:IPR016455), Xyloglucan endo-transglycosylase, C-terminal (InterPro:IPR010713), Beta-glucanase (InterPro:IPR008264), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320), Concanavalin A-like lectin/glucanase (InterPro:IPR008985), Glycoside hydrolase, family 16 (InterPro:IPR000757); BEST Arabidopsis thaliana protein match is: xyloglucan endotransglucosylase/hydrolase 5 (TAIR:AT5G13870.1); Has 2067 Blast hits to 2047 proteins in 283 species: Archae - 0; Bacteria - 225; Metazoa - 0; Fungi - 377; Plants - 1377; Viruses - 0; Other Eukaryotes - 88 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G03210.2

Model type
Protein coding
Short Description
xyloglucan endotransglucosylase/hydrolase 9
Curator Summary
encodes a member of xyloglucan endotransglucosylase/hydrolases (XTHs) that catalyze the cleavage and molecular grafting of xyloglucan chains function in loosening and rearrangement of the cell wall. Gene is expressed in shoot apex region, flower buds, flower stalks and internodes bearing flowers.
Computational Description
xyloglucan endotransglucosylase/hydrolase 9 (XTH9); FUNCTIONS IN: hydrolase activity, acting on glycosyl bonds, xyloglucan:xyloglucosyl transferase activity; INVOLVED IN: carbohydrate metabolic process, cellular glucan metabolic process; LOCATED IN: apoplast, cell wall; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Xyloglucan endotransglucosylase/hydrolase (InterPro:IPR016455), Beta-glucanase (InterPro:IPR008264), Xyloglucan endo-transglycosylase, C-terminal (InterPro:IPR010713), Concanavalin A-like lectin/glucanase (InterPro:IPR008985), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320), Glycoside hydrolase, family 16 (InterPro:IPR000757); BEST Arabidopsis thaliana protein match is: xyloglucan endotransglucosylase/hydrolase 5 (TAIR:AT5G13870.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR