GT1673

CSHL Arabidopsis genetrap mutant lines

Original: GT1673

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT1673

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 14666498 [Map]; Strand: w
      • AT2G34760.1 - [+] show detail - pseudogene, tubulin beta chain -related, similar to beta-7 tubulin GI:416149 ...
        Distance: -422; Region: promoter
      • AT2G34770.1 - [+] show detail - fatty acid hydroxylase 1
        Distance: 0; Region: intron1 (5UTR)
    Flanking Genome Sequence: GT1673 - 3-prime edge 
    TTTACCGACC GTTACCGACC GTTTTCATCC CTACTTAATA TTAATACCAA 
    ACTCACTTAA TTCAATTCTA TATACTCGAT GAATTAGTCC CAAAAATAGA 
    AATTCCTAGC ACAAAAAGCA AGTATTAGAT GAGAGTAAAA ATACTAATCA 
    TTTAAAAACA TAGAATGTAT GAACAGAGCT CCCTCTCACT CATTTCCCTC 
    CAGGACCCAC CACCAAATAT ATATACAAGT AAACTACCCA AATAAATCAA 
    CTCACAAGTT AACATCAAGG AAACAAAAAA ACACACAGTT CCTAATTGAG 
    TTGAGACACA TAATCTATTA AAGAGAAAAA TGGCTTAACC AAAAGTTCTT 
    TTAATNTGAA ATCATTCACT ATTGTTGCAG TGAGAAACAA TGAGGCTCAA 
    GAAATAAATT CACATGTTTT CGAGACACCT TCCTTTCTAG CAACAATTGA 
    GCATTNTTTA TTTAGCCTTC ATAACAATGC GTAA

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 14666599 [Map]; Strand: w
      • AT2G34760.1 - [+] show detail - pseudogene, tubulin beta chain -related, similar to beta-7 tubulin GI:416149 ...
        Distance: -523; Region: promoter
      • AT2G34770.1 - [+] show detail - fatty acid hydroxylase 1
        Distance: 0; Region: intron1 (5UTR)
    Flanking Genome Sequence: GT1673 - 5-prime edge 
    TTGGTTATCT TGCCAAACAG TAAACCCCTG TCGTTTTCTT AGTCATTTAA 
    GAAGTAATGC TTAAGATTCA GGCCTCTAAT CTGGTTATGA TAGTGAAGAG 
    GATCTGTAAA TTTACCTATA CGACCTGTTG AAAAGGACCT CTGGTG

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 14666595 [Map]; Strand: w
      • AT2G34760.1 - [+] show detail - pseudogene, tubulin beta chain -related, similar to beta-7 tubulin GI:416149 ...
        Distance: -519; Region: promoter
      • AT2G34770.1 - [+] show detail - fatty acid hydroxylase 1
        Distance: 0; Region: intron1 (5UTR)
    Flanking Genome Sequence: GT1673 - 5-prime edge 
    TAGGTTGGTT ATCTTGCCAA ACAGTAGACC CCTGTCGTTT TCTTAGTCAT 
    TTAAGAAGTA ATGCTTAAGA TTCAGGCCTC TAATCTGGTT ATGATAGTGA 
    AGAGGATCTG TAAATTTACC TATACGACCT GTTGAAAAGG ACCTCTGGTG 
    TTTGTTACTA TGCGTTTCTG ATCAATATAG ACATAGTTGG ATCATATTCT 
    TCT

AT2G34760.1

Model type
Pseudogene
Computational Description
pseudogene, tubulin beta chain -related, similar to beta-7 tubulin GI:416149 from (Zea mays); blastp match of 47% identity and 3.0e-15 P-value to SP|Q41784|TBB7_MAIZE Tubulin beta-7 chain (Beta-7 tubulin). (Maize) {Zea mays}
Link
InterPro Scan - TAIR

AT2G34770.1

Model type
Protein coding
Short Description
fatty acid hydroxylase 1
Curator Summary
encodes a fatty acid hydroxylase, required for the AtBI-1-mediated suppression of programmed cell death.
Computational Description
fatty acid hydroxylase 1 (FAH1); FUNCTIONS IN: fatty acid alpha-hydroxylase activity, catalytic activity; INVOLVED IN: very long-chain fatty acid metabolic process, negative regulation of programmed cell death; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Fatty acid hydroxylase (InterPro:IPR006694); BEST Arabidopsis thaliana protein match is: fatty acid hydroxylase 2 (TAIR:AT4G20870.1); Has 784 Blast hits to 784 proteins in 354 species: Archae - 0; Bacteria - 388; Metazoa - 105; Fungi - 140; Plants - 78; Viruses - 0; Other Eukaryotes - 73 (source: NCBI BLink).
Link
InterPro Scan - TAIR