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GT16750

CSHL Arabidopsis genetrap mutant lines

Original: GT16750

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT16750

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 179068 [Map]; Strand: c
      • AT4G00413.1 - [+] show detail - pseudogene, similar to tomato ripening associated membrane protein, blastp ma...
        Distance: -907; Region: promoter
      • AT4G00416.1 - [+] show detail - methyl-CPG-binding domain 3
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT16750 - 3-prime edge 
    AATGAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCC 
    TAGTTGGAAG TGTCTTAAAG TGAGATCTAT AGAGTCACAA GAAGATTACG 
    AAGAGATTCG TAGTAAAACA CTGGAAAAGT TTTTTGAATG CAAGAGATGT 
    GAAGAACCTG GAGATATGGT AATGAACTTT GATTCCCTTA CTATGCGTTG 
    GTTTCAGGAT GAACATAGTA TACCCAAAAC CCCTCAAGGT TTGAAGAGAG 
    TTTTGGTCGT GAGAACAAAC TGCGTGAAAG TCGATGTTTA CTATGAATCA 
    TTGGCTCCTA GACGAAAGAG GTTTAAATCT ATAAAGGAAG TTGCAACGTT 
    TATTGAAGAC AAGGAAGAAT TTAAAGACAT GACGCTTGAA GAGGTTTCTT 
    TTGCCGCACC CAAACGGCTG AAACTAAAAA AGAAACCTGT CGATAGTCAT 
    TCTAGCTCAA GGAACACTGA GGAAGATGGT GTCTCGAGAG ATGCTTAGTT 
    TTGTCTGCTA TCACTTATCA GGATCATTCA TCGCTTCTCT TTATCTCTTC 
    TCTTTTGAAC TTTTGGTTTT TGTCTTTGAT TTCTTTTGGT TTTTGTCGTT 
    TGAACATTTG ATGCTTTATG TTTTCCCAGT TTAAGCAATT TATTTCCTCT 
    TTTATCATAT CTTTTATCAT GTACTTGAGT AATCTGCCTA GTAATCTCCT 
    TCTCTCTGAA CAAACTGCTA CCTAAATTAC TAGCAGCAAA CTTTGAATCA 
    TACACGCTTC TTAGAATTCA AAGCTTCTGA AAGTCCATCT TTGAACAACT 
    CAACCTTTGA TTTATCTTTG CACTTCTGAT ATTTTGACAG TCTTAGACCA 
    TTCTGGTAGC TTTCCTTGTA GCTATCTCAC ACTAACT

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 178988 [Map]; Strand: c
      • AT4G00413.1 - [+] show detail - pseudogene, similar to tomato ripening associated membrane protein, blastp ma...
        Distance: -827; Region: promoter
      • AT4G00416.1 - [+] show detail - methyl-CPG-binding domain 3
        Distance: -34; Region: promoter
    Flanking Genome Sequence: GT16750 - 5-prime edge 
    AGTCAATTAA CGATGTCGTT GGTTTTCGCT ACACACATAA AACCAAACAA 
    AGACTAAGAT AAAAATAAAA CATTGTCGAT ACCTTGTGAG ATGCAATGAT 
    AAAAAACGAA TCTTCATGTA ATGATAAAAA TAAAACACCA TATTTCAAGT 
    TTTGGGATCT TCATGCATTG ACAAAACAAA TCTTCATGCA ATAATAAAAA 
    TAAAATATTG TCGATACCTT GTGAGATGTA GCTTGAGTAG TCTTCCTCAC 
    CATATTTCAA GTTTTGAGAG AGATAAAAAT ATTTTTTTGG GAGTTTAGCC 
    TTTTAGATGA AGTGAAGAAG AACTAAGTAT ATCCTTTGGA TTCGTAAA

AT4G00413.1

Model type
Pseudogene
Computational Description
pseudogene, similar to tomato ripening associated membrane protein, blastp match of 91% identity and 4.3e-11 P-value to GP|395044|emb|CAA52067.1||X73847 tomato ripening associated membrane protein {Lycopersicon esculentum}
Link
InterPro Scan - TAIR

AT4G00416.1

Model type
Protein coding
Short Description
methyl-CPG-binding domain 3
Curator Summary
Protein containing methyl-CpG-binding domain.Has sequence similarity to human MBD proteins.
Computational Description
methyl-CPG-binding domain 3 (MBD3); FUNCTIONS IN: methyl-CpG binding, DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Methyl-CpG DNA binding (InterPro:IPR001739), Zinc finger, CW-type (InterPro:IPR011124); BEST Arabidopsis thaliana protein match is: methyl-CPG-binding domain 4 (TAIR:AT3G63030.1); Has 103 Blast hits to 103 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 103; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR