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GT16758

CSHL Arabidopsis genetrap mutant lines

Original: GT16758

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT16758

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 2020343 [Map]; Strand: w
      • AT3G06520.1 - [+] show detail - agenet domain-containing protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT16758 - 3-prime edge 
    AAACGGTAGA GGTATTTTAC CGACCGTTAC CGACCGTTTT CATCCCTACG 
    CCAGAAACTA GTCGTTCCAC CTCAACGCGG TCACCGCCGC GCCAAAATCG 
    ATCGCTCGTC ATCAGTAAAC AATTTGTGCA ACCCAACGAG AAAATAGGGA 
    TAGGAGTAAG ACTGAAGATG ATGAAATTTC CAGAGACCTT GATTCAACAG 
    AAGAAAATCA GAGAAGAGTG AGAGCTATTA TATATAGAGA AAGAGACAGT 
    GGCGACACAA GCATGCTTAT ATTATGAGTC GGTCAAGATA GGTCAATGCC 
    GAAAAAAGGA AAACACCAAA ACAGCACCTC GTTTCTAATT TATGTAATAC 
    AACGTCCTGT TGTTTTTCTT

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 2020422 [Map]; Strand: w
      • AT3G06520.1 - [+] show detail - agenet domain-containing protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT16758 - 5-prime edge 
    CGGCCTATTT TCCGGCGAGT GTTGTTAGCC CGCCTTCCGT GAGAAAGAAA 
    CTCGTTTGGG TGGAGCATGA ATCCCTAACT GTTGGAGGTT CCGTTTCCGT 
    ACGTATGAAG GAGTACGTCA CTCCCACGCG CCTCCGTCCA TCTCCACCGC 
    GTGAACTCAA CAGACGGTTC AAAGCTGACG ATGAGGTCGA TGTCTTCAGA 
    GATAGCGAAG GTTGCTGGGT TAGAGGCAAT GTTACGACCG TACTTGAAGA 
    TTCAAGGTAC ATTGTGGAGT TTAAAGGGGA AAATCGTCCA GAAATAGAGG 
    TTGATCAGTT CAATTTGAGG CTTCATCGTG AATGGCTAGA TGGTGGGTGG 
    GTTCCTTCTC TTCTCCAACA GGTAAAACAT TTCTCTGCGT TTGAATTGAA 
    TCTAGGGTTT GTAGAAAAAT AGTGAATTTA ATGTTTTAGG GATTAAGATA 
    CATTGAAAGA TTTGACGAAT TAATTGTAAA TT

AT3G06520.1

Model type
Protein coding
Short Description
agenet domain-containing protein
Computational Description
agenet domain-containing protein; FUNCTIONS IN: RNA binding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Tudor-like, plant (InterPro:IPR014002), Agenet (InterPro:IPR008395); BEST Arabidopsis thaliana protein match is: agenet domain-containing protein (TAIR:AT1G09320.1); Has 523 Blast hits to 271 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 518; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).
Link
InterPro Scan - TAIR