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GT16781

CSHL Arabidopsis genetrap mutant lines

Original: GT16781

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT16781

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 23092031 [Map]; Strand: c
      • AT3G62420.1 - [+] show detail - basic region/leucine zipper motif 53
        Distance: 0; Region: exon1 (CDS)
      • AT3G62422.1 - [+] show detail - conserved peptide upstream open reading frame 3
        Distance: 0; Region: exon1 (3UTR)
    Flanking Genome Sequence: GT16781 - 3-prime edge
    TTTTACCGAC CGTTACCGAC CGTTTTCATC CCTAGAAGCC TGTGCTCTCA 
    AAACATTGTT CTTAGACTCC ATTTCAATGT ATTTCTTTGA AGCTTCATCA
    ACCTGTTCGG TGATTTTAGC GTTATCATTC TTGAGAAGAG TGACTTCGTT
    GATCAAATCA CCAAGTTGCT TCTGTTTCCT CATCCTTGAC CTGCGAGCAG
    ATTCTCTGTT AGAGATCATT CTCTTCCTCT TCCTCTCATC CGTCACCGTG
    GCGTACCTCG GATCATTATC GGATTCAGGA CTTGTTTGCA TTTGCAACGA
    CCCCATTTCT CGTTGACTTT TT
  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 23091959 [Map]; Strand: c
      • AT3G62420.1 - [+] show detail - basic region/leucine zipper motif 53
        Distance: 0; Region: exon1 (CDS)
      • AT3G62422.1 - [+] show detail - conserved peptide upstream open reading frame 3
        Distance: 0; Region: exon1 (3UTR)
    Flanking Genome Sequence: GT16781 - 5-prime edge
    TTTCTCCCTG CAGGCTTCGG AGTTGACGGA TAGGTTGAGA TCATTGAACT 
    CTGTGCTTGA GATGGTTGAA GAGATTAGTG GTCAGGCTTT GGATATTCCT
    GAGATTCCTG AATCTATGCA GAACCCTTGG CAGATGCCTT GTCCAATGCA
    ACCAATCAGA GCTTCTGCTG ATATGTTTGA TTGCTGAAGA TGGATGATTC
    ATATCTGAAG GATCAAAAAT GAAGCATTGA GATCGAGTCT TTGGTCTGTT
    TTACTTACTG TCCTTGTTGT AACAATTAGT GTGTCATTGG TGAATTGAGT
    CTTGTGTTGT CAATGGACAA CGCAATCTTT ATGCAATTTC AATTTGTTCG
    TGTCTTTGTA TGGTTTTGTA GCCTCAGTCC TCTAGTCTTG TGTCTCATGT
    AATTGGTGTC TAATGTGTTT CTTATTGAAT TCAAGCTTTC TTATTATTCG
    CTGTGCATTA CCTGTTATGA AATTTTGGCT TTTGTATTCG TTTATGGAAC
    TACAAATTAC AAATGTTTTT AGAGCTAATT CAGATTCAAA GACATGATTT
    ATATAACCTG ACATTACCAA ATGGACCGGA ACAAAGATTT GTCATATACG
    TATGAATCCG GAACAGGATC TTGATCGCTT CAGTTGTCGT AAGTACGGCA
    CTCGTTGGTC TCAGGATTGT CTTTGCAGTA TTCCTCCAAA GGGTCCGAAC
    CATCAGC

AT3G62420.1

Model type
Protein coding
Short Description
basic region/leucine zipper motif 53
Curator Summary
Encodes a group-S bZIP transcription factor. Forms heterodimers with group-C bZIP transcription factors. The heterodimers bind to the ACTCAT cis-element of proline dehydrogenase gene.
Computational Description
basic region/leucine zipper motif 53 (BZIP53); FUNCTIONS IN: sequence-specific DNA binding, DNA binding, protein heterodimerization activity, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Basic-leucine zipper (bZIP) transcription factor (InterPro:IPR004827), bZIP transcription factor, bZIP-1 (InterPro:IPR011616); BEST Arabidopsis thaliana protein match is: basic leucine-zipper 44 (TAIR:AT1G75390.1); Has 1452 Blast hits to 1450 proteins in 90 species: Archae - 2; Bacteria - 4; Metazoa - 13; Fungi - 3; Plants - 1410; Viruses - 0; Other Eukaryotes - 20 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G62422.1

Model type
Protein coding
Short Description
conserved peptide upstream open reading frame 3
Curator Summary
Upstream open reading frames (uORFs) are small open reading frames found in the 5' UTR of a mature mRNA, and can potentially mediate translational regulation of the largest, or major, ORF (mORF). CPuORF3 represents a conserved upstream opening reading frame relative to major ORF AT3G62420.1
Computational Description
conserved peptide upstream open reading frame 3 (CPuORF3); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR