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GT16799

CSHL Arabidopsis genetrap mutant lines

Original: GT16799

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT16799

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    Not mapped

    Flanking Genome Sequence: GT16799 - 3-prime edge 
    AACGGTAGAG GTATTTTACC GACCGTTACC GACCGTTTTC ATCCCTATAC 
    ATCATCGAAC GACTAATCTC TGA

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 347734 [Map]; Strand: c
      • AT2G01810.1 - [+] show detail - RING/FYVE/PHD zinc finger superfamily protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT16799 - 5-prime edge 
    CCTACTTTCT CCCTGATGAT GTAAAGAGGG AAAACGACGC CATTTGCTTG 
    GCTTCCAAGG AAAATAGTAG AGACGGTGGC TCCGTCGATG GTGTAATCTT 
    CAATCTCGGC ATATTCACGG AGGAACGATC TGATGTTGTC GCGGAAAGTT 
    GCGGCGAGGT TGAAGAAAGG TGGTGATGAT GAAGAAGAAG AGATGGCAAA 
    ATCGTTAATA AGGAGGACTT TGGGGGCTTT TTGTCTCTCC GTGAGAGCGT 
    CGTATGCGGT TATCGCCATG ACTGAAAAAG GACTACGAGA AAAGAGAGAG 
    AGAGAGAGAG GATTGGTTTT ATCATTGGGA TCACGTGACA GGATCTACTT 
    GTGAATTGAC GGTTTTGCCC TTGTGGCGGC GATCGTGTTT TTTGGTTTGT 
    TGTTGTTAAA AGAAAGAGTG GAATTTCCGG TTTACTTGGT TTTGGTTTGG 
    GATAACGTGA GATTGGCCTG ATTTGATTGT GACGGGACTC ATCTTCTTCC 
    GTGTGGTTTG TTTATTAACG ATTTTTGCCC TTTCGGCGGC GATTTTGGTT 
    CATTGGTTTT GTTATTTTAT TGCAAGAGTG GGAGTTCCGG TTAAAGAGGG 
    TTTGGTTCGG TTTAATTTGG TTTGTGACCA CGTGACATTG GCTGATTGTT 
    GCGACATGTC TTTCGTGTGG GTTTGCGTGA ATTGACGATT TTGCTCAATG 
    TGATTTCTGA ATATGTGTTC GTGTTGGCCA TATGGTGTAT TCATGAAAAT 
    A

AT2G01810.1

Model type
Protein coding
Short Description
RING/FYVE/PHD zinc finger superfamily protein
Computational Description
RING/FYVE/PHD zinc finger superfamily protein; FUNCTIONS IN: DNA binding, zinc ion binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell, male gametophyte, flower, pollen tube; EXPRESSED DURING: M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Zinc finger, PHD-type, conserved site (InterPro:IPR019786), Zinc finger, PHD-type (InterPro:IPR001965), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), Zinc finger, PHD-finger (InterPro:IPR019787); BEST Arabidopsis thaliana protein match is: RING/FYVE/PHD zinc finger superfamily protein (TAIR:AT1G66170.1); Has 637 Blast hits to 622 proteins in 140 species: Archae - 0; Bacteria - 0; Metazoa - 159; Fungi - 216; Plants - 250; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).
Link
InterPro Scan - TAIR