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GT16824

CSHL Arabidopsis genetrap mutant lines

Original: GT16824

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT16824

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 10638795 [Map]; Strand: c
      • AT5G28635.1 - [+] show detail - transposable element gene
        Distance: 0; Region: exon1 (NonCoding)
    Flanking Genome Sequence: GT16824 - 3-prime edge 
    GGTAGAGGTA TTTTACCGAC CGTTACCGAC CGTTTTCATC CCTAACGGCG 
    GCTGTGTCGC CTTACACCTT GGCTAGCTCC GACATTCCAT GGACGATGAT 
    TTCCTCTGTT CTTTTGAACG GAGAAAACTA CATTGAATGG TCTGAAGAGA 
    TGTTGAATGC TCTTCAAGCT AAAAGAAAAA CAGGTTTCAT TAATGGCACA 
    ATCAAAAAAC CGTCCAGTGA AGATCCTAAT TTCGATAATT GGAAAGTGGT 
    GAATTCAATG ATCGTAGGTT GGATTCGGGC TTCGATTGAA CCCAAAGTCA 
    AATCTACTGT GACGTTCATN TCCTCTCGAC CATCTTCTAT GGGACGAACT 
    ACAACAACGT TTCTCGGTGA GCAACAATGT TCGGGTTCAT TACATCAAAG 
    CTCAACTTGC CTCATGTCAT CAAGATGGAC AAACAGTAAT CGATTACTAT 
    GGAAGATTGT GTAATTTGTG GGATGAGTTG AAGAATTATC AAGCAAGTGC 
    GGTTTGTGCT CATGGATCGA TAATGTCTGC AATTGTCAAG GAATGAGATA 
    ATGAGAAGCT TCACCAGTTC ATAATGGGCC TTGATGATTC AAGATTTGGT 
    GGGCTTTGTA CAAGTCTCAT TAACATGGAT CCGCTGCCTC TCCTTGGCGT 
    TGCTTATTCC AAAGTAATCA GAGAAGAACA AAGGCTTGGG TTCTT

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 10638617 [Map]; Strand: c
      • AT5G28635.1 - [+] show detail - transposable element gene
        Distance: 0; Region: exon1 (NonCoding)
    Flanking Genome Sequence: GT16824 - 5-prime edge 
    GAAGGTTGCG CAACAAGCGC AACAGTTTGT CCAGCTGTAG CGAGTACATC 
    GTCACCAGCC ATGACTTTCT TAATTAACAC GTAAGGTATT GAACTAACTT 
    ACTTTATAAA CTCACGAACA TTGTGTATTT ATACAAGAGG ATCATTATAT 
    GTGATAAACC CAAACTCCTA AATTATAGGA AATAAAATAT ATCAGGAGTA 
    TCATTTTCGA TCAGGGAATT CGTTTAACGG TCGGTACAAT TCTGAAAAAG 
    TTGAAAGATT TACCGTCTTT GTTCTAAATA TTACTACGAG ATTTTTGATC 
    TATATATATA TTTTTTTGTT TAAATGTGTA ATTTATATAT CAAACCAAAA 
    GAATATTTAC AAAAGAATAA AAAGACCTAG CAAAAAAACA GGTTTGTAAA 
    GAATAAGAGT GTAAGAAAAC AGAACAAAAA CCACGAGCAA AGAATAGTGG 
    ACGTATTGGT TTTCCTGCAG CTATGGTCGG ACCATGAGTC ACCGTTGGAA 
    TAACAGACGC AAACGAGGGG TGGAGGAGTA GTCAAGTGAT GAAATTCTGT 
    TGCGAATGAA TTTCTCGCCA TTCCGGATTA GTTGAGCCGA TGTAGTGGAG 
    CCGTTGCCAT GGGTTCGTGA ATTCCTCTC

AT5G28635.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
copia-like retrotransposon family, has a 5.1e-162 P-value blast match to GB:CAA72989 open reading frame 1 (Ty1_Copia-element) (Brassica oleracea)
Link
InterPro Scan - TAIR