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GT16838

CSHL Arabidopsis genetrap mutant lines

Original: GT16838

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT16838

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 11032341 [Map]; Strand: w
      • AT4G20460.1 - [+] show detail - NAD(P)-binding Rossmann-fold superfamily protein
        Distance: 0; Region: intron1 (5UTR)
      • AT4G20470.1 - [+] show detail - unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae ...
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT16838 - 3-prime edge 
    TTTTACCGAC CGTTACCGAC CGTTTTCATC CCTATTCCTA TTTACCCAAT 
    TCATTAACCT GATTTTGATC TGTTTCTGCA TTTTGCCACA CTTTTGAAAC 
    GAATTCGGAT TCTAATCAAA ATTACGAAAT TGGGGATTGA AACGTTTCTG 
    GGTATCTTAT GATCCGTGAT TTCTCAGATG GGTTTTTCAT AAAGCAGAGA 
    AATTTCGATC AAAGTCGATG ACTTTAACAT AGACTCTTTC TACATTTTTG 
    TTGCTCTGTT TTTGTT

AT4G20460.1

Model type
Protein coding
Short Description
NAD(P)-binding Rossmann-fold superfamily protein
Computational Description
NAD(P)-binding Rossmann-fold superfamily protein; FUNCTIONS IN: coenzyme binding, UDP-glucose 4-epimerase activity, binding, catalytic activity; INVOLVED IN: galactose metabolic process, cellular metabolic process, nucleotide-sugar metabolic process, metabolic process; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding domain (InterPro:IPR016040), UDP-glucose 4-epimerase (InterPro:IPR005886); BEST Arabidopsis thaliana protein match is: NAD(P)-binding Rossmann-fold superfamily protein (TAIR:AT1G30620.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G20470.1

Model type
Protein coding
Computational Description
unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR