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GT16845

CSHL Arabidopsis genetrap mutant lines

Original: GT16845

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT16845

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 1411925 [Map]; Strand: c
      • AT2G04160.1 - [+] show detail - Subtilisin-like serine endopeptidase family protein
        Distance: -4180; Region: intergenic
      • AT2G04170.1 - [+] show detail - TRAF-like family protein
        Distance: 5257; Region: intergenic
    Flanking Genome Sequence: GT16845 - 3-prime edge 
    TGAAACGGTA GAGGTATTTT ACCGACCGTT ACCGACCGTT TTCATCCCTA 
    GAGTTAAATT CTCGAAGGTT CTGGTCGTGA ATATAGGTGC ATAAGATTAT 
    ATGAACATTG ACATGAGACT GATTATGTGA TTATGTGTGT TTTAAGCATG 
    AGACTGTGAT TTGATTGTAT CGGTTGATGG AAACTGTTAG TTAACTATCT 
    TGATATCAAA TGGGCGGGAA TCAAAGCCGA TTCTAGGCTA AAGCTCATGA 
    AATGATGCTT GAAACACAAA CATATATTAA GACGTTAAAA GCATAAGTTT 
    TTGAAATTTC GGTGTGGTGG AGAGGTCGAT TACAGTTGGC ATTATCCCAA 
    GTTCAAACCC CAAATTTATA TTTGTGACTT CTATTTTATA ATTTAGTTTG 
    TAAATGGGTT TCTATAAAAA AAAACTATTT GGCTGGTTTA GGCAGTAAAT 
    AATTCATGTT GAGATGGCAG AAATGAACGT TCTCACTGGA TAAATCGTTA 
    TTCATGCCTT TTTTTGTGAT GCATGTAAGT AATTGTAACG CCCGTGAACC 
    GGAAAATCGG TTAGGATTTG TATTTAAATT GTCCGGTTTA ATCGATTGGA 
    TTAATTGAAA ACCTTAGAGT GTGCCTGTAA AAGAAGAAAA CTCGAAATTA 
    GGGCTTTATT TAGCCACTTT TCGTTTTATA AAGGAGAAAA AGAGAGAGAA 
    GGAGAAAAAC TAGAATTGTT AGGGTTTTGG AGGAAATGTT TTCGACAAAT 
    CAAATCGTTG TCAAAGGTAA CGAAATTTG

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 11032321 [Map]; Strand: c
      • AT4G20460.1 - [+] show detail - NAD(P)-binding Rossmann-fold superfamily protein
        Distance: 0; Region: intron1 (5UTR)
    Flanking Genome Sequence: GT16845 - 5-prime edge 
    TTTTACCGAC CGTTACCGAC CGTTTTCTCC CTATTCCTAT TTACCCAATT 
    CATTAACCTG ATTTTGATCT GTAGCTGCAT TTTGCCACAC TTTTGAAACG 
    AATTCGGATT CTAATCAAAA TTACGAAATT GGGGATTGAA ACGTTTCTGG 
    GTATCTTATG ATCGCGGATT TCTCAGATGG GTTTTTCATA AAGCAGAGAA 
    ATTTCGATCA AAGGCGATGA CTTTA

AT2G04160.1

Model type
Protein coding
Short Description
Subtilisin-like serine endopeptidase family protein
Curator Summary
isolated from differential screening of a cDNA library from auxin-treated root culture. encodes a protein similar to subtilisin-like serine protease which is believed to be active outside the plant cell.
Computational Description
AUXIN-INDUCED IN ROOT CULTURES 3 (AIR3); FUNCTIONS IN: serine-type endopeptidase activity; INVOLVED IN: proteolysis, response to auxin stimulus, lateral root morphogenesis; LOCATED IN: endomembrane system; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Protease-associated PA (InterPro:IPR003137), Proteinase inhibitor, propeptide (InterPro:IPR009020), Peptidase S8/S53, subtilisin/kexin/sedolisin (InterPro:IPR000209), Peptidase S8, subtilisin-related (InterPro:IPR015500), Peptidase S8/S53, subtilisin, active site (InterPro:IPR022398), Proteinase inhibitor I9, subtilisin propeptide (InterPro:IPR010259); BEST Arabidopsis thaliana protein match is: Subtilase family protein (TAIR:AT5G59810.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G04170.1

Model type
Protein coding
Short Description
TRAF-like family protein
Computational Description
TRAF-like family protein; CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), MATH (InterPro:IPR002083); BEST Arabidopsis thaliana protein match is: TRAF-like family protein (TAIR:AT5G26280.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G20460.1

Model type
Protein coding
Short Description
NAD(P)-binding Rossmann-fold superfamily protein
Computational Description
NAD(P)-binding Rossmann-fold superfamily protein; FUNCTIONS IN: coenzyme binding, UDP-glucose 4-epimerase activity, binding, catalytic activity; INVOLVED IN: galactose metabolic process, cellular metabolic process, nucleotide-sugar metabolic process, metabolic process; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding domain (InterPro:IPR016040), UDP-glucose 4-epimerase (InterPro:IPR005886); BEST Arabidopsis thaliana protein match is: NAD(P)-binding Rossmann-fold superfamily protein (TAIR:AT1G30620.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR