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GT16864

CSHL Arabidopsis genetrap mutant lines

Original: GT16864

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT16864

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 30238044 [Map]; Strand: c
      • AT1G80420.4 - [+] show detail - BRCT domain-containing DNA repair protein
        Distance: -273; Region: promoter
      • AT1G80420.1 - [+] show detail - BRCT domain-containing DNA repair protein
        Distance: -328; Region: promoter
      • AT1G80420.2 - [+] show detail - BRCT domain-containing DNA repair protein
        Distance: 0; Region: intron1 (5UTR)
      • AT1G80420.3 - [+] show detail - BRCT domain-containing DNA repair protein
        Distance: -316; Region: promoter
    Flanking Genome Sequence: GT16864 - 3-prime edge 
    AACGGTAGAG GTATTTTACC GACCGTTACC GACCGTTTTC ATCCCTACCA 
    TTACTAAATC ATTCCTCGTT TCAATCTTTT TTTCCTAAGT TAGCTCAGTC 
    AAATCCTTCG TATACCTACA ATGAGCTCGA TGAATTAGAC TTAATGCACT 
    GGAGAAGCTA AAGCTTGCAA GGGGAGGAAA CATCCTATTT CTTCTGAAAT 
    ATATCGTATG CTTGTTCAAN TTCACTCGAC TAATGATGTG TCATGTCATG 
    TCTCAGATTC TCGTAACATC CGCAACACAA ACCCATCATA TATGCTTTTA 
    TCTTATCTTT CTCTCGTTGT GTTGTTTTTT TTGCTACAAC ACAATTCCAG 
    GACTAAGTTT CTGAATATCA ATGAGTCTAA ACATGTCAAA ATTAAACTAC 
    GTCTTCACTT TGTCTTTAAC GTACCTTTCT TTGATGAAAA AATGAAAAAA 
    AGATAAAAAA AATAACGTAC CCTTCTTTAA CCGCAAACTG TTTTTGGACT 
    TTTGAACCCA TTTCCGAAAT TTCAGG

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 30237912 [Map]; Strand: c
      • AT1G80420.4 - [+] show detail - BRCT domain-containing DNA repair protein
        Distance: -141; Region: promoter
      • AT1G80420.1 - [+] show detail - BRCT domain-containing DNA repair protein
        Distance: -196; Region: promoter
      • AT1G80420.2 - [+] show detail - BRCT domain-containing DNA repair protein
        Distance: 0; Region: intron1 (5UTR)
      • AT1G80420.3 - [+] show detail - BRCT domain-containing DNA repair protein
        Distance: -184; Region: promoter
    Flanking Genome Sequence: GT16864 - 5-prime edge 
    AATGAAACAT TAGAAATCCT AAAAGGGCAG AACAAGTTGA TGTCCAAAAA 
    AAAAGAAAAA AGGGCAGAAG AGTAAAAACG CGAATGAAAG AGTCAAAGCA 
    AAAAATTGGT AAAAAAAAAG CGTGAACGGC AGGATTCGAA CCTGCGCGGG 
    CAAAGCCCAC ATGATTTCTA GTCATGCCCG ATAACCACTC CGGCACGTCC 
    ACCTTTGCTA GTTGAATCAT TTGTTAAATT GAAAACCCGC CATTTTGATC 
    TGATTTTGCA CTGAATGTTG ACAAATTGAA TAGTCTCTGA TGATTTCGAT 
    CAAAGAGAAG CCACGGGGGG AGCGCTAGCA CTTAAAGGTT CCTCGCTTTC

AT1G80420.1

Model type
Protein coding
Short Description
BRCT domain-containing DNA repair protein
Computational Description
ATXRCC1; FUNCTIONS IN: transcription coactivator activity; INVOLVED IN: DNA repair; LOCATED IN: intracellular; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: BRCT (InterPro:IPR001357); Has 261 Blast hits to 261 proteins in 81 species: Archae - 0; Bacteria - 0; Metazoa - 156; Fungi - 25; Plants - 49; Viruses - 0; Other Eukaryotes - 31 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G80420.2

Model type
Protein coding
Short Description
BRCT domain-containing DNA repair protein
Computational Description
ATXRCC1; FUNCTIONS IN: transcription coactivator activity; INVOLVED IN: DNA repair; LOCATED IN: intracellular; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: BRCT (InterPro:IPR001357); Has 261 Blast hits to 261 proteins in 81 species: Archae - 0; Bacteria - 0; Metazoa - 156; Fungi - 25; Plants - 49; Viruses - 0; Other Eukaryotes - 31 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G80420.3

Model type
Protein coding
Short Description
BRCT domain-containing DNA repair protein
Computational Description
ATXRCC1; FUNCTIONS IN: transcription coactivator activity; INVOLVED IN: DNA repair; LOCATED IN: intracellular; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: BRCT (InterPro:IPR001357); Has 261 Blast hits to 261 proteins in 81 species: Archae - 0; Bacteria - 0; Metazoa - 156; Fungi - 25; Plants - 49; Viruses - 0; Other Eukaryotes - 31 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G80420.4

Model type
Protein coding
Short Description
BRCT domain-containing DNA repair protein
Computational Description
ATXRCC1; FUNCTIONS IN: transcription coactivator activity; INVOLVED IN: DNA repair; LOCATED IN: intracellular; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: BRCT (InterPro:IPR001357).
Link
InterPro Scan - TAIR