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GT16930

CSHL Arabidopsis genetrap mutant lines

Original: GT16930

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT16930

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 370970 [Map]; Strand: w
      • AT2G01830.1 - [+] show detail - CHASE domain containing histidine kinase protein
        Distance: -3290; Region: intergenic
      • AT2G01840.1 - [+] show detail - transposable element gene
        Distance: 2155; Region: intergenic
    Flanking Genome Sequence: GT16930 - 3-prime edge 
    CGGTAGAGGT ATTTTACCGA CCGTTACCGA CCGTTTTCAT CCCTGACTAA 
    ATCCATATAT TCTACTTTTT TACATCTTTG TGAATAAAGG ATAAAAATTA 
    GCAAACTTGT CGAAAAAATA GAGTGTGTCC TACATGAACA TGAAATGGAT 
    GCTTTATATG AATCTCACGT CGGAAAACTA TAATTGATAG AAACTGAGTA 
    GCAATATTGC CACACCAACG TCGCCATCTT CAT

AT2G01830.1

Model type
Protein coding
Short Description
CHASE domain containing histidine kinase protein
Curator Summary
Histidine kinase: cytokinin-binding receptor that transduces cytokinin signals across the plasma membrane
Computational Description
WOODEN LEG (WOL); FUNCTIONS IN: osmosensor activity, cytokine binding, cytokinin receptor activity, protein histidine kinase activity, phosphoprotein phosphatase activity; INVOLVED IN: in 7 processes; LOCATED IN: membrane; EXPRESSED IN: 30 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Signal transduction histidine kinase, homodimeric (InterPro:IPR009082), CHASE (InterPro:IPR006189), Signal transduction histidine kinase, core (InterPro:IPR005467), ATPase-like, ATP-binding domain (InterPro:IPR003594), CheY-like (InterPro:IPR011006), Signal transduction response regulator, receiver domain (InterPro:IPR001789), Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain (InterPro:IPR003661), Signal transduction histidine kinase-related protein, C-terminal (InterPro:IPR004358); BEST Arabidopsis thaliana protein match is: histidine kinase 2 (TAIR:AT5G35750.1); Has 136787 Blast hits to 109703 proteins in 3011 species: Archae - 761; Bacteria - 121785; Metazoa - 32; Fungi - 2267; Plants - 2388; Viruses - 27; Other Eukaryotes - 9527 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G01840.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
non-LTR retrotransposon family (LINE), has a 9.6e-34 P-value blast match to GB:NP_038607 L1 repeat, Tf subfamily, member 9 (LINE-element) (Mus musculus)
Link
InterPro Scan - TAIR