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GT16935

CSHL Arabidopsis genetrap mutant lines

Original: GT16935

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT16935

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 15603338 [Map]; Strand: c
      • AT5G38975.1 - [+] show detail - transposable element gene
        Distance: 3294; Region: intergenic
      • AT5G38980.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: -3433; Region: intergenic
    Flanking Genome Sequence: GT16935 - 3-prime edge 
    CGGTAGAGGA TTTTACCGAC CGTTACCGAC CGTTTTCATC CCTACCGATT 
    CATGTGTGTA GGTGACATTG ATTGTTTTAA AATTTTCATA AACAAAAGTA 
    TAAATGCAAT GCTTCGTCTG ATAAATGGAG CTCCAAAAGT CGCTATAGCA 
    AACTCATAAT TCGAACCATT TCCAACGAGT AAACCACAGT ACAGTCACAG 
    TCCCTTGAGA GACCTAAGCT TACAAAGGGA GCAAAGATTT CCATAGTTAA 
    AGAGCTCATT TAGCCATAAA GGATGACCGT GAGTGATATA TGATTAGAAC 
    CTGTTTTCAT TAGTCACACA CTTCAACT

AT5G38975.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
copia-like retrotransposon family, has a 1.0e-15 P-value blast match to GB:CAA30503 pol polypeptide (Ty1_Copia-element) (Drosophila melanogaster)
Link
InterPro Scan - TAIR

AT5G38980.1

Model type
Protein coding
Computational Description
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 3 Blast hits to 3 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR