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GT16942

CSHL Arabidopsis genetrap mutant lines

Original: GT16942

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT16942

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 3110968 [Map]; Strand: c
      • AT3G10090.1 - [+] show detail - Nucleic acid-binding, OB-fold-like protein
        Distance: -942; Region: promoter
      • AT3G10100.1 - [+] show detail - transposable element gene
        Distance: -810; Region: promoter
    Flanking Genome Sequence: GT16942 - 3-prime edge 
    CGGTAGAGGT ATTTTACCGA CCGTTACCGA CCGTTTTCAT CCTTCCTGCA 
    CCAACACACA TATTTGAAGA CCTTTAATTT TGAGTGGAAA AAGATAGTCC 
    AATAGTTTGG CTACACCTAT CTTGGACTAT ATATATTAAA CACATTTCGC 
    AATCATCCAA AGACTCCATC TCATACAACT AGACACTACA TAAAAACGGG 
    TATTCTAGCA CTCGGAAAAT GCTATCTAAT AATAAAGTAA TGTTGCAAAT 
    CTATAAAGTT GAGCAAGTAG ATATCACATG ATCAGTCTAA TTTCCATCTC 
    CCATAATTTC CTTCATTTGT TGAATTATTT CTCTATCAGT GTTTGATCAG 
    GTTAGAACAT GTGGCGAGCT CATGACTCAG GCCCATTAAC AGGCCAGCCG 
    GGATTTCCCG GTTCAATCGA ATTCTCGATT TTATTCACGT TATTCCTCGG 
    TTTAAACCGG TATTGTCGGA GGTGCTAATT CCTGCACCAA CAATTAGTCC 
    CCCCCCAGTT CGGCGAATCC GAGTTGCTTA ATTCGAAATT TCCGAACTTA 
    GAAATTGAAT ATTCGATTTA AATCTTGGAA AGCGTGAATT GATCATTAGA 
    TTTCCGAATC GATTCGTATT TCGAACGTAT CTGACACGTG TCAAATCACC 
    GCGTCTGTAC GCGCGCGTGA AGCTCGGGAA ACGAAGCGTC CCGTAGGTTT 
    AATGATGAC

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 3110899 [Map]; Strand: c
      • AT3G10090.1 - [+] show detail - Nucleic acid-binding, OB-fold-like protein
        Distance: -873; Region: promoter
      • AT3G10100.1 - [+] show detail - transposable element gene
        Distance: -879; Region: promoter
    Flanking Genome Sequence: GT16942 - 5-prime edge 
    CTTTCTCCCT GTATTTGTGG TTCTTTTTTT GTATGAAATA ATGGTTGAGG 
    TGCACGGAAA GAAGCTCAAA ACCCTTGAGG TAATAAGGTT CTTTTACAGC 
    TACCATTCTG ACGTGCTTTT ATATATTAAT TCTTCACTAC ATTAGCTTTT 
    TTTTTCAAGG AAATTGGCCT AAAACCACTT GTTTCAACCA GGTAATTATG 
    CTAATTTTGA TGTCAAAAAG GTCAGGAACC CATCTTTGGA ACCCCACATT 
    CAAAGGAGGT CAATATGTAA TATGAAAAGA AAAAAAAAGA TTTGAAAATA 
    TGAGAAGATT TAATCTCTCT ACAAATATTT AATACTCAAA AAATCTTACA 
    ATTCGGTTTT AAAAATAAAC AAATTTATTG TCAATAATAT TAACAACTCA 
    AAAACATTTT GATAAATCTC TCTATAATAA CTAAAAACAC AATTTCTTGA 
    ATATTTCACC CAAAATTCCC AATCTCTTTA AAACTGGCAA CCAAAAAACC 
    ATTTGGATAA TCTAACTCTA ACAAAATTAT CTTAAGCGAC AAATTAAGGA 
    CTCTTTTCCA TCCAAATCAA TAATTTTCTT TTTATATTCA AAATTTCAAG 
    ATTTATAAAA AATTGA

AT3G10090.1

Model type
Protein coding
Short Description
Nucleic acid-binding, OB-fold-like protein
Computational Description
Nucleic acid-binding, OB-fold-like protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: cytosolic small ribosomal subunit, cytosolic ribosome, ribosome, cell wall; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Nucleic acid-binding, OB-fold (InterPro:IPR012340), Ribosomal protein S28e (InterPro:IPR000289); BEST Arabidopsis thaliana protein match is: Nucleic acid-binding, OB-fold-like protein (TAIR:AT5G03850.1); Has 1066 Blast hits to 1066 proteins in 391 species: Archae - 235; Bacteria - 0; Metazoa - 333; Fungi - 148; Plants - 161; Viruses - 0; Other Eukaryotes - 189 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G10100.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
similar to ASY2, DNA binding [Arabidopsis thaliana] (TAIR:AT4G32200.1); similar to filament protein-related [Arabidopsis thaliana] (TAIR:AT4G20730.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G09910.1); similar to hypothetical protein 27.t00126 [Brassica oleracea] (GB:ABD65062.1); contains domain (Phosphotyrosine protein) phosphatases II (SSF52799)
Link
InterPro Scan - TAIR