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GT16945

CSHL Arabidopsis genetrap mutant lines

Original: GT16945

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT16945

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 793690 [Map]; Strand: c
      • AT4G01840.1 - [+] show detail - Ca2+ activated outward rectifying K+ channel 5
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT16945 - 5-prime edge
    GCTTGTCTGA TTATGGATTT AGAGATTGGT GATGGTTTTT TGGTTTCTGG 
    AGGTTTGGTT CTTAAGTCTT TGATGATTAC CATAGCTGGA GCTGTACGAG
    ATCGGTGAAG AGGTCTTGTC TGAGATAAAA AGCGTTTTGT TTCGTCTGAG
    TCTGAGTCTT GGTCTTCTTT GTCGTCTTGT ACGGATTGTT CGAGGTCTTG
    ATGATGAAGG AGAAGACGTT CTTGGGAGAT TTCATGGAAG AAGGAAGTGT
    TTGAGATAGA GCGAGGGATT GTGATGGAGG CGGAGGAGGA GGAGGAGGAG
    GAGGAGGAGG GATTTTCCGG TATGGGTTGG AGGCGGAAAC GTGGTTGTGG
    GCTGATGAGT GGTTCCATTT ACCAACAAAT TAGGAATCTC TGAATCTTGA
    AAAGCTAA

AT4G01840.1

Model type
Protein coding
Short Description
Ca2+ activated outward rectifying K+ channel 5
Curator Summary
Encodes AtTPK5, a member of the Arabidopsis thaliana K+ channel family of AtTPK/KCO proteins. AtTPK5 is targeted to the vacuolar membrane. May form homomeric ion channels in vivo.
Computational Description
Ca2+ activated outward rectifying K+ channel 5 (KCO5); FUNCTIONS IN: outward rectifier potassium channel activity; INVOLVED IN: potassium ion transport; LOCATED IN: plant-type vacuole membrane; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Potassium channel, two pore-domain (InterPro:IPR003280), Ion transport 2 (InterPro:IPR013099); BEST Arabidopsis thaliana protein match is: Ca2+ activated outward rectifying K+ channel 6 (TAIR:AT4G18160.1); Has 4836 Blast hits to 4447 proteins in 1041 species: Archae - 139; Bacteria - 2196; Metazoa - 1258; Fungi - 189; Plants - 266; Viruses - 0; Other Eukaryotes - 788 (source: NCBI BLink).
Link
InterPro Scan - TAIR