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GT16960

CSHL Arabidopsis genetrap mutant lines

Original: GT16960

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT16960

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 2842584 [Map]; Strand: w
      • AT3G09260.1 - [+] show detail - Glycosyl hydrolase superfamily protein
        Distance: 0; Region: exon5 (CDS)
    Flanking Genome Sequence: GT16960 - 3-prime edge
    TTTACCGACC GTTACCGACC GTTTTCATCC CTAGATGGGA GAAAGGAGAA 
    AGGAGTGAGT CAAGCTGGTG TGCAATTCTA CCACGACCTC ATCGACGAGC
    TCATAAAAAA TGGTTACATA TATTAATCAC TTAAAAACGA AAAAAAAAAA
    CATTTATAAT CTCTTACGTA TTAAACTTCC CAAATTTTTT AATTTTTTTC
    GGAAATAAGG AAAAACCCCT TTCGTAACGG TTTTTCACGG GGACCCTCCC
    CAAAATTTAA AAAATGAATA TGGGGGTTTT TTAAGCAAAA GGATTGGGTA
    ATTTTTTCTG TTGGAAAACA AACCCCAATC CCTTTTTGTT TTCTTTGAAA
    TGCGAATATA AAGGGTATAT TCAACAATTT TTTGCAATAT TGTAGGAAGG
    ATTTCCAAAA GTTTGCAAAT TTTGTTTTCC AAAAATACGG GGGAAAAGTG
    AAACATTGGA TCCCTTTCAA TGACCCAGGG GTTTTCTCCC CCCCTGGCTA
    TAACGAAGGC AAAAAGGCCC CGGGCCGTTG CTCTTCTTAC GCCAAGGCTA
    AATGCCAAGA CGGACAATCA GGATCCAAGG TTTACCTT
  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 2842654 [Map]; Strand: w
      • AT3G09260.1 - [+] show detail - Glycosyl hydrolase superfamily protein
        Distance: 0; Region: intron4 (CDS)
    Flanking Genome Sequence: GT16960 - 5-prime edge
    CCTCTTTCTC CCTGCTCCAT CTGATAAATT ATTGTTTTGT TTCATTAATA 
    TAGCAATCAT CGTAAATACA CCAAATTCGA TTGACACTAA GTAGTGATTA
    ATAAATAACT AGATTTATTT GTATATCGAT CAATCCTTAT ATATATTTAC
    TCACGAGGAA ATATTCTTGG CCATGCGATA GACATTCTAA AGGCGTCTGT
    GTTTAGATTC TTCATTAGTT GGATATCTTC CTGCAAACAT TTTTCAGATG
    AGAATTTTTT TTATCAACAT CTAGTCTAAA TGAATAATCA ATAAACTATT
    AAGATATGCA TATAATATGA TAATTTCTTC AATCTTTATT AATATATACC
    TTATAACGAT GGAAGAAATC AACGGCCACA TCGCCGTTAT CGTTATTGCA
    CCTCTCTGAA ATATAAAATT AAGAAAAAAT ATAAGATTAG GTGAACCAAA
    ACATTCTAAC TATATACAGT ATGTAAAAGA TAATGTAGAA ACACTCACCT
    GGATATCTTC TACAGTAGAT GTCCCATAAG GCTGGTCCAC GACAAGTTTC
    ATT

AT3G09260.1

Model type
Protein coding
Short Description
Glycosyl hydrolase superfamily protein
Curator Summary
Encodes beta-glucosidase.The major constituent of ER bodies. One of the most abundant proteins in Arabidopsis seedlings. Exist in an soluble (inactive) and non-soluble (active) form, most probably formed in a polymerization process. Involved in the mutualistic interaction between Arabidopsis and the endophytic fungus Piriformospora indica.
Computational Description
PYK10; FUNCTIONS IN: beta-glucosidase activity, copper ion binding, hydrolase activity, hydrolyzing O-glycosyl compounds, fucosidase activity; INVOLVED IN: ER body organization, response to salt stress, response to symbiotic fungus, cellular response to cold, response to osmotic stress; LOCATED IN: peroxisome, nucleus, vacuole, membrane, ER body; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 1 (InterPro:IPR001360), Glycoside hydrolase, family 1, active site (InterPro:IPR018120), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: Glycosyl hydrolase superfamily protein (TAIR:AT1G66280.1); Has 11331 Blast hits to 11008 proteins in 1473 species: Archae - 140; Bacteria - 7847; Metazoa - 701; Fungi - 200; Plants - 1444; Viruses - 0; Other Eukaryotes - 999 (source: NCBI BLink).
Link
InterPro Scan - TAIR