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GT16961

CSHL Arabidopsis genetrap mutant lines

Original: GT16961

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT16961

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 3153848 [Map]; Strand: w
      • AT5G10090.1 - [+] show detail - Tetratricopeptide repeat (TPR)-like superfamily protein
        Distance: 0; Region: exon4 (CDS)
    Flanking Genome Sequence: GT16961 - 3-prime edge 
    TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCC TTTGCAGCTT 
    GGGAATTGGG AATCGGCGGT TGGAGATTAC GAGATATTGA GAAAAGAGAC 
    ACCGGACGAT GACGAAGTGA TAAAAGGATT GTCGGAGGCA CACAAGCAGC 
    TCGTGAAACG CCGTGGCCAT GACTCTTGAA AATCTCCCGG CGATTAAAAA 
    ACCGCCGTGA GAACGATCGG GAAGTTACGG ATTTAGATAA CAACCCCGTG 
    ATCTTGCTTT TTTTT

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 14026109 [Map]; Strand: w
      • AT4G28340.1 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: -454; Region: promoter
      • AT4G28350.1 - [+] show detail - Concanavalin A-like lectin protein kinase family protein
        Distance: -468; Region: promoter
    Flanking Genome Sequence: GT16961 - 5-prime edge 
    CCTACTTTCT CCCTGCTTAC AGGTGACGAA TAATTTGAGT TATGTGCGAT 
    ATGTTTGAAA GAATTAAAGA GGAGAATCAA GAAGAAGATG AATATTTGAC 
    ATTTCAAAGC TGACTTTTTT GACGAATAAG TTCATCATTA TTCACACCTA 
    TAAATGTGGA CAGCGAAATA CCAAGTCCAA CAATTTCACG ATTAATTCCA 
    AGTGGCTTGG ATCAAGGAAT ATACAAAAAC AAAATTCCAA ATGCTTAGGA 
    AAATAAATAA ACGAGAGATC AAATTATCAC GGCGGATATT ATTTCGTCCA 
    CATTTGTTGT TCAAACAGAT TTCTAACACA TATAATTAGC ATATATACAT 
    TAAACAACAT TATCTCCTTA ATAATTTTGA CTCTGGAACA GATCTTTCCA 
    GTTTCAGACA ATATATTTGA ACAATCGGTT CGTTGAATCG AGAACAAACC 
    AATCAAATCT CTTTTGACAA AGCTCTTCTT CTTCTTCCCA TAAAACTTCA 
    CAACGGCACA CGTCTACGAA AAAACCTCTC TCAGTCACCA TGTTCTCTAA 
    AGTTTCCA

AT4G28340.1

Model type
Protein coding
Computational Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G28330.1); Has 46 Blast hits to 46 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 46; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G28350.1

Model type
Protein coding
Short Description
Concanavalin A-like lectin protein kinase family protein
Computational Description
Concanavalin A-like lectin protein kinase family protein; FUNCTIONS IN: in 6 functions; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: stem, cotyledon, leaf, stamen; EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis; CONTAINS InterPro DOMAIN/s: Legume lectin, beta chain (InterPro:IPR001220), Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase, catalytic domain (InterPro:IPR000719), Concanavalin A-like lectin/glucanase (InterPro:IPR008985); BEST Arabidopsis thaliana protein match is: Concanavalin A-like lectin protein kinase family protein (TAIR:AT4G04960.1); Has 117572 Blast hits to 116208 proteins in 4641 species: Archae - 127; Bacteria - 13536; Metazoa - 42743; Fungi - 9918; Plants - 33874; Viruses - 420; Other Eukaryotes - 16954 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G10090.1

Model type
Protein coding
Short Description
Tetratricopeptide repeat (TPR)-like superfamily protein
Computational Description
Tetratricopeptide repeat (TPR)-like superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: male gametophyte, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), Tetratricopeptide TPR-1 (InterPro:IPR001440), Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide TPR2 (InterPro:IPR013105), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734); BEST Arabidopsis thaliana protein match is: tetratricopeptide repeat (TPR)-containing protein (TAIR:AT5G65160.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR