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GT16983

CSHL Arabidopsis genetrap mutant lines

Original: GT16983

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT16983

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 23306086 [Map]; Strand: w
      • AT5G57550.1 - [+] show detail - xyloglucan endotransglucosylase/hydrolase 25
        Distance: 0; Region: intron1 (CDS)
    Flanking Genome Sequence: GT16983 - 3-prime edge 
    GGTAGAGGTA TTTTACCGAC CGTTACCGAC CGTTTTCATC CCTATAAATA 
    ACATCATAAC ATATATAACA TGGCCGTTTT TAGAATAACG TGTGGAAAGC 
    TCCAATTAAA AAAATTCTTT CTTAAAGGAT AAATTTTTGA ATATTTCCTA 
    TTTCCTAAAG AAAAATTATC AACAGAGATT CTTAAATAAT TTGAGACGGT 
    CATATACGAT GTTACTAACT TACCATGTGA AATTTTTATT ATTTGGATAT 
    TAATTAGAAC AGTTTGTGAT TGTGTTTAAT TTTCCATGCA GTTGAAGTCA 
    AAAGGTGATA CGTGGGACGA AATCGATTTC GAGTTTCTTG GTAATCTAAC 
    TGGTGATCCG TATACCATGC ATACGAATGT GTATACTCAA GGCAAAGGTG 
    ATAGAGAACA

AT5G57550.1

Model type
Protein coding
Short Description
xyloglucan endotransglucosylase/hydrolase 25
Curator Summary
xyloglucan endotransglycosylase-related protein (XTR3)
Computational Description
xyloglucan endotransglucosylase/hydrolase 25 (XTH25); FUNCTIONS IN: hydrolase activity, acting on glycosyl bonds, xyloglucan:xyloglucosyl transferase activity; INVOLVED IN: plant-type cell wall biogenesis; LOCATED IN: endomembrane system, cell wall, apoplast; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Xyloglucan endotransglucosylase/hydrolase (InterPro:IPR016455), Xyloglucan endo-transglycosylase, C-terminal (InterPro:IPR010713), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320), Concanavalin A-like lectin/glucanase (InterPro:IPR008985), Glycoside hydrolase, family 16 (InterPro:IPR000757), Glycoside hydrolase, family 16, active site (InterPro:IPR008263); BEST Arabidopsis thaliana protein match is: xyloglucan endotransglycosylase 6 (TAIR:AT4G25810.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR