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GT17029

CSHL Arabidopsis genetrap mutant lines

Original: GT17029

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT17029

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 17370174 [Map]; Strand: w
      • AT2G41660.1 - [+] show detail - Protein of unknown function, DUF617
        Distance: 985; Region: intergenic
      • AT2G41670.1 - [+] show detail - P-loop containing nucleoside triphosphate hydrolases superfamily protein
        Distance: -3909; Region: intergenic
    Flanking Genome Sequence: GT17029 - 3-prime edge 
    TTTTACCGAC CGTTACCGAC CGTTTTCATC CTTAACTAAT AATTTGCTTG 
    GTAACGAATA ATTTACAATG ACAAGTTCTT AAGATTTATG AAGTTTATCA 
    GAATTTATAT TTTATCTTGT TTGGAACTTG AAAAAAACAA ACTGATTAAT 
    TTATTTAACA AATAATCAAG TAAAGTACCA AAGTCTCAAA AAAAAAAAAC 
    TTAAACTTGA TCTTTGGGGA AACCGGCAAA TCAACAAAAA AATTCCACCT 
    TTTCGGATTT TTTTTGCCTA AAACCCAAAG GGGGGGGCAA TTTTTTTTTG 
    GGAGTTGGTT TTTTTTTGGG AGTGGGAAAA CCCCCGAAAT GGAAACCAAA 
    GGGAAAACCC CCTTAACCCA AAGGGGGGTG AAAATTTTTT TTTTGGGGTT 
    AAAAAAAAAA AATTGGGGTT TTCCCCAAG

AT2G41660.1

Model type
Protein coding
Short Description
Protein of unknown function, DUF617
Curator Summary
Essential for hydrotropism in roots. Mutant roots are defective in hydrotropism, and have slightly reduced phototropism and modified wavy growth response. Has normal gravitropism and root elongation.
Computational Description
mizu-kussei 1 (MIZ1); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF617, plant (InterPro:IPR006460); BEST Arabidopsis thaliana protein match is: Protein of unknown function, DUF617 (TAIR:AT3G25640.1); Has 258 Blast hits to 256 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 258; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G41670.1

Model type
Protein coding
Short Description
P-loop containing nucleoside triphosphate hydrolases superfamily protein
Computational Description
P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: GTP binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: GTP-binding protein, HSR1-related (InterPro:IPR002917); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT4G10650.1); Has 3980 Blast hits to 3980 proteins in 1445 species: Archae - 109; Bacteria - 2376; Metazoa - 398; Fungi - 429; Plants - 195; Viruses - 0; Other Eukaryotes - 473 (source: NCBI BLink).
Link
InterPro Scan - TAIR