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GT17031

CSHL Arabidopsis genetrap mutant lines

Original: GT17031

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT17031

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 1571942 [Map]; Strand: w
      • AT4G03540.1 - [+] show detail - Uncharacterised protein family (UPF0497)
        Distance: 459; Region: intergenic
      • AT4G03550.1 - [+] show detail - glucan synthase-like 5
        Distance: -1406; Region: intergenic
    Flanking Genome Sequence: GT17031 - 3-prime edge 
    TAGAGTATTT TACCGACCGT TACCGACCGT TTTCATCCCT ACTTCTGGGA 
    CTAATTTATT ACAGTATACA TATGTTTAAA TAATAGGCAT GTGGGATTAT 
    AATCTAAATT CTAAAGGTGG AATCTTCCTT TTCTTCTGAC ACAACAAATG 
    GTCGCATGTG CTTCACCAAG CATTAGAAAA ATACACACCA TTTGGAGCAA 
    CGTTAACGTT AATTTG

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 1572002 [Map]; Strand: w
      • AT4G03540.1 - [+] show detail - Uncharacterised protein family (UPF0497)
        Distance: 519; Region: intergenic
      • AT4G03550.1 - [+] show detail - glucan synthase-like 5
        Distance: -1346; Region: intergenic
    Flanking Genome Sequence: GT17031 - 5-prime edge 
    TCTACTTTCA TCCTGCCCAG AAGAGCATTT CATCATACTC TATAATTAAT 
    CAAATTTAAA TACATTTGTG TTGAATAGAA GATGACTAGA TTCACTTGAT 
    TTTTTAAATA CTGCTTGGTC GTTTGACCAG TCAGGATCCA GACTGAAAAA 
    TTCTCAAAAG GTATGAACTA TTTTTTACAT TTTAAAATCG GTAAGAAATG 
    AATATATAGT AAATACGACT GTTTGGTCAT AGTTTTCAAC GCGTCAATTT 
    GTTTGTGTTG GCTACTAGTT AAACTTGTAT TAGTGAGAAT TTAAGCTGGG 
    ATAAAATATT TGAGCAGAGA ATTTGCGTAT GGGACATTCT ATCCTTTTAA 
    TGAAATCATT ATAAAATGGA GAAAAGTCAC TAGAAAAAGA GAGGGAATGG 
    GGCGAGAGTA TGAAGGAAGG GTCCCATGTG ATTGTGAATC CAATTGAATT 
    TTTTGAAAAC AACTATGGTT ATGGATGGAG GCAGTGGTCT AATTTGTCTG 
    CGGTTTAATC TATTTCATTT TAGGGGCGGA CAATAAACTG CTGCGGACCA 
    AGTTTATTTG TACGTTAAAA CGGGCCGCAA ATGATCCGTT GCGGTTTTCT 
    TCTATTTTTT T

AT4G03540.1

Model type
Protein coding
Short Description
Uncharacterised protein family (UPF0497)
Computational Description
Uncharacterised protein family (UPF0497); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0497, trans-membrane plant (InterPro:IPR006702), Uncharacterised protein family UPF0497, trans-membrane plant subgroup (InterPro:IPR006459); BEST Arabidopsis thaliana protein match is: Uncharacterised protein family (UPF0497) (TAIR:AT1G03700.1); Has 607 Blast hits to 607 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 607; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G03550.1

Model type
Protein coding
Short Description
glucan synthase-like 5
Curator Summary
Encodes a callose synthase that is required for wound and papillary callose formation in response to fungal pathogens Erysiphe and Blumeria. Mutants are resistant to P. parasitica and exhibit an exaggerated PR1 response.Contributes to PAMP-induced basal defense.
Computational Description
glucan synthase-like 5 (GSL05); FUNCTIONS IN: transferase activity, transferring glycosyl groups, 1,3-beta-glucan synthase activity; INVOLVED IN: in 12 processes; LOCATED IN: 1,3-beta-glucan synthase complex, plasma membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 48 (InterPro:IPR003440); BEST Arabidopsis thaliana protein match is: glucan synthase-like 1 (TAIR:AT4G04970.1); Has 1221 Blast hits to 894 proteins in 155 species: Archae - 2; Bacteria - 0; Metazoa - 0; Fungi - 695; Plants - 448; Viruses - 0; Other Eukaryotes - 76 (source: NCBI BLink).
Link
InterPro Scan - TAIR