Home
Mutant Lines
GT17045

GT17045

CSHL Arabidopsis genetrap mutant lines

Original: GT17045

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT17045

Determination of insertion point(s)

3 prime edge [+] show sequence
1. Chromosome: 4; Position: 357209 [Map]; Strand: w
  - AT4G00840.1 - [+] show detail - DHHC-type zinc finger family protein
    Distance: 0; Region: exon1 (5UTR)
  - AT4G00850.1 - [+] show detail - GRF1-interacting factor 3
    Distance: -342; Region: promoter
Flanking Genome Sequence: GT17045 - 3-prime edge
```
TAGAGTATTT TACCGACCGT TACCGACCGT TTTCATCCCT AGTCCTCCGC 
ACCAAGCAAA CTCCGATCCC TCACCGTGGC TCCGGATATT TTACGGCGGT 
TGTTCCCGGC TCGGACTCGA AGAATTGGCC GGATTCTCCC TTTGACCAGG 
CTGGAGATGA ACCTTTTCCG GTTCTGCTCC GGTCTGAAAG TCCTCGGCTA 
TTTCATGATC CTT
```

5 prime edge [+] show sequence

Chromosome: 4; Position: 357295 [Map]; Strand: w
- AT4G00840.1 - [+] show detail - DHHC-type zinc finger family protein
  Distance: -16; Region: promoter
- AT4G00850.1 - [+] show detail - GRF1-interacting factor 3
  Distance: -256; Region: promoter

GACGAATCGC CGTCGTGGAG CTGATATTGA TACAGATTTA AAGTAACCTT 
CTTCTTGACA CAGAAGCTTT CATAATTCTT TATAAGGCCC ATTAACAGGC 
CCAATAAATA ATAACAGCTA CAAATGTTGT CTTTTTTTGG TTATCGTAGA 
GCTGACGAAA AATCAGACAA GGTGCCACGT GTACATTCGG TGGGGGAGAC 
AAATTAATTG GTTGGGGGAC TTTTTTGTCC TACGATTTCC CAGAAACCTC 
GTCGGCGAAA TTCAAACAAA TCAAAAGTCT TAAATTTAAG GATAATCCAA 
AATATTCGTT TGTTGAATAT TTTTGCATCA GTTTGTTTTG CATTGGGCTC

AT4G00840.1

Model type: Protein coding
Short Description: DHHC-type zinc finger family protein
Computational Description: DHHC-type zinc finger family protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Zinc finger, DHHC-type (InterPro:IPR001594); BEST Arabidopsis thaliana protein match is: DHHC-type zinc finger family protein (TAIR:AT3G60800.1); Has 5117 Blast hits to 5115 proteins in 251 species: Archae - 0; Bacteria - 0; Metazoa - 2189; Fungi - 766; Plants - 830; Viruses - 0; Other Eukaryotes - 1332 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT4G00850.1

Model type: Protein coding
Short Description: GRF1-interacting factor 3
Curator Summary: Arabidopsis thaliana GRF1-interacting factor 3 (GIF3) mRNA
Computational Description: GRF1-interacting factor 3 (GIF3); CONTAINS InterPro DOMAIN/s: SSXT (InterPro:IPR007726); BEST Arabidopsis thaliana protein match is: GRF1-interacting factor 2 (TAIR:AT1G01160.1); Has 414 Blast hits to 414 proteins in 93 species: Archae - 0; Bacteria - 2; Metazoa - 279; Fungi - 27; Plants - 81; Viruses - 0; Other Eukaryotes - 25 (source: NCBI BLink).
Link: InterPro Scan - TAIR