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GT17071

CSHL Arabidopsis genetrap mutant lines

Original: GT17071

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT17071

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 25099309 [Map]; Strand: w
      • AT5G62520.1 - [+] show detail - similar to RCD one 5
        Distance: 0; Region: exon4 (3UTR)
      • AT5G62520.2 - [+] show detail - similar to RCD one 5
        Distance: 0; Region: exon3 (3UTR)
      • AT5G62530.1 - [+] show detail - aldehyde dehydrogenase 12A1
        Distance: 0; Region: exon16 (3UTR)
    Flanking Genome Sequence: GT17071 - 3-prime edge
    AACGGTAGAG GTATTTTACC GACCGTTATC TCCCGATTTC ATCCCTAGGT 
    GATTGTGTCC TTGAAAAAAA ACGCCAAAGT GATCTGCAAT GGAGATTTAG
    TGTTGTACTT TATGTCCACA AGCTTTGATG ATGTGAACTA GTAACTTGTC
    TCCGGTTATG CTTCTGACTC GTTGGATTAG TTCGCTCCGT GTAATTCTCC
    TATTCTGTTA AATCCAAAGG AAAGCAACAA TTAGAATGTG AAATGAAATC
    ACCTCAAAAG ATAATGGAAG AGGAAACAAA AAAAAAAAAA CCCTTCTTTG
    GGAACTTTTG AAAGGTTCCA AAAGGCCAAG TTTTTGAAAG GGGGGGAAAA
    CTTTGGAAAA TTTTTTTATA AAAACGGGAA AGGCCCCCCG GGGGGGCCCC
    AACCCTTTGG GCCTCCCGGC AAAAACGGTT TAACTTTTTT CAAAAACCCT
    TAAAAAAAGC CAGGAAAACC CCCGGTTTGG GATTTTTTTT TTTTCTAACC
    AAAAGGGTAA AAGGGGGTTT TGGCGCAAAA AAAAAACCCG GGGAAAAAAG
    GGGGGTCCCG GGGGGACCCC CCCAAAAAAA CTTTTTCCGG AAAAACAAAA
    TTTCCCCCCC CAAAACCAAC CCTGGGGAAA TTT
  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 10774710 [Map]; Strand: w
      • AT5G28715.1 - [+] show detail - transposable element gene
        Distance: 4233; Region: intergenic
      • AT5G28720.1 - [+] show detail - unknown protein; Has 4 Blast hits to 4 proteins in 2 species: Archae - 0; Bac...
        Distance: -1421; Region: intergenic
    Flanking Genome Sequence: GT17071 - 5-prime edge
    TTTATTCGGT TTAAAGGGGA ACACATATAA AAGCCAAAAA AAC
  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 25099586 [Map]; Strand: w
      • AT5G62520.1 - [+] show detail - similar to RCD one 5
        Distance: 0; Region: exon4 (3UTR)
      • AT5G62520.2 - [+] show detail - similar to RCD one 5
        Distance: 0; Region: exon3 (3UTR)
      • AT5G62530.1 - [+] show detail - aldehyde dehydrogenase 12A1
        Distance: 0; Region: exon16 (3UTR)
    Flanking Genome Sequence: GT17071 - 5-prime edge
    CAAAAACATT TGTATTATTG TCTGGCTTTG AGCTGAAGAA AATTCTGGTG 
    GACTGAGTTT TACAATAGTT CTCTCTCTGT CTTAATCCCT CTACCCCTTG
    ACTAAGTCAA CGTCGTTGAA AACTTCATGT TTCAAGCTCT TATTCCCTCA
    CACGGAAACT ACTCGTAGAG ATAAAACTAC AAAACTCATA TTTATTTGAT
    GCAACAGCAC ACTAAGATCT TAGTTTATTA ATTATTAGTG GACACACCAC
    TTCTAAGTAG ATGGAGGAAG TTCCCAACCT TGTGGAACCG GACCATAATC
    GTAGATGACT TCTCTGTGGC ATGACCAAAC CAGCTTTATA GCCTCTGGTG
    TCCCT

AT5G28715.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
gypsy-like retrotransposon family, has a 0. P-value blast match to GB:AAD27547 polyprotein (Gypsy_Ty3-element) (Oryza sativa subsp. indica)
Link
InterPro Scan - TAIR

AT5G28720.1

Model type
Protein coding
Computational Description
unknown protein; Has 4 Blast hits to 4 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 4; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G62520.1

Model type
Protein coding
Short Description
similar to RCD one 5
Curator Summary
Encodes a protein with similarity to RCD1 but without the WWE domain. The protein does have a PARP signature upstream of the C-terminal protein interaction domain. The PARP signature may bind NAD+ and attach the ADP-ribose-moiety from NAD+ to the target molecule. Its presence suggests a role for the protein in ADP ribosylation. Up-regulated by NaCl. SRO5 and P5CDH (an overlapping gene in the antisense orientation) generate 24-nt and 21-nt siRNAs, which together are components of a regulatory loop controlling reactive oxygen species (ROS) production and stress response.
Computational Description
similar to RCD one 5 (SRO5); FUNCTIONS IN: NAD+ ADP-ribosyltransferase activity; INVOLVED IN: oxygen and reactive oxygen species metabolic process, response to salt stress; LOCATED IN: mitochondrion; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Poly(ADP-ribose) polymerase, catalytic domain (InterPro:IPR012317), RST domain of plant C-terminal (InterPro:IPR022003); BEST Arabidopsis thaliana protein match is: similar to RCD one 4 (TAIR:AT3G47720.1); Has 162 Blast hits to 153 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 159; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G62520.2

Model type
Protein coding
Short Description
similar to RCD one 5
Curator Summary
Encodes a protein with similarity to RCD1 but without the WWE domain. The protein does have a PARP signature upstream of the C-terminal protein interaction domain. The PARP signature may bind NAD+ and attach the ADP-ribose-moiety from NAD+ to the target molecule. Its presence suggests a role for the protein in ADP ribosylation. Up-regulated by NaCl. SRO5 and P5CDH (an overlapping gene in the antisense orientation) generate 24-nt and 21-nt siRNAs, which together are components of a regulatory loop controlling reactive oxygen species (ROS) production and stress response.
Computational Description
similar to RCD one 5 (SRO5); FUNCTIONS IN: NAD+ ADP-ribosyltransferase activity; INVOLVED IN: oxygen and reactive oxygen species metabolic process, response to salt stress; LOCATED IN: mitochondrion; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Poly(ADP-ribose) polymerase, catalytic domain (InterPro:IPR012317); BEST Arabidopsis thaliana protein match is: similar to RCD one 4 (TAIR:AT3G47720.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G62530.1

Model type
Protein coding
Short Description
aldehyde dehydrogenase 12A1
Curator Summary
Encodes mitochondrial Delta-pyrroline-5- carboxylate dehydrogenase. Involved in the catabolism of proline to glutamate. Involved in protection from proline toxicity. Induced at pathogen infection sites. P5CDH and SRO5 (an overlapping gene in the sense orientation) generate 24-nt and 21-nt siRNAs, which together are components of a regulatory loop controlling reactive oxygen species (ROS) production and stress response.
Computational Description
aldehyde dehydrogenase 12A1 (ALDH12A1); FUNCTIONS IN: 3-chloroallyl aldehyde dehydrogenase activity, cobalt ion binding, zinc ion binding, 1-pyrroline-5-carboxylate dehydrogenase activity; INVOLVED IN: oxygen and reactive oxygen species metabolic process, response to salt stress, proline catabolic process to glutamate, proline metabolic process; LOCATED IN: mitochondrion, chloroplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aldehyde/histidinol dehydrogenase (InterPro:IPR016161), Aldehyde dehydrogenase (InterPro:IPR015590), Aldehyde dehydrogenase, N-terminal (InterPro:IPR016162), Aldehyde dehydrogenase, conserved site (InterPro:IPR016160); BEST Arabidopsis thaliana protein match is: aldehyde dehydrogenase 7B4 (TAIR:AT1G54100.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR