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GT17082

CSHL Arabidopsis genetrap mutant lines

Original: GT17082

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT17082

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 45132 [Map]; Strand: c
      • AT5G01110.1 - [+] show detail - Tetratricopeptide repeat (TPR)-like superfamily protein
        Distance: -757; Region: promoter
      • AT5G01120.1 - [+] show detail - Protein of unknown function (DUF674)
        Distance: 0; Region: intron1 (5UTR)
    Flanking Genome Sequence: GT17082 - 5-prime edge 
    AAAGTAAAAG GAGCCATTTT TGAGACAATG ATAGAGTAAA AGGGTAACTG 
    CAGATAAATC TACAATCTTT

AT5G01110.1

Model type
Protein coding
Short Description
Tetratricopeptide repeat (TPR)-like superfamily protein
Computational Description
Tetratricopeptide repeat (TPR)-like superfamily protein; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR-like) superfamily protein (TAIR:AT1G05670.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G01120.1

Model type
Protein coding
Short Description
Protein of unknown function (DUF674)
Computational Description
Protein of unknown function (DUF674); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF674 (InterPro:IPR007750); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF674) (TAIR:AT5G43240.3); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR