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GT17086

CSHL Arabidopsis genetrap mutant lines

Original: GT17086

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT17086

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 8853721 [Map]; Strand: c
      • AT2G20562.1 - [+] show detail - unknown protein; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana p...
        Distance: -2792; Region: intergenic
      • AT2G20570.1 - [+] show detail - GBF's pro-rich region-interacting factor 1
        Distance: -1637; Region: intergenic
    Flanking Genome Sequence: GT17086 - 3-prime edge 
    AAACGGTAGA GGTATTTTAC CGACCGTTAC CGACCGTTTT CATCCCTACC 
    TATAAGGGCC TGAAAGTATG TGGAATTTCT TACAATTTTC TTCCTTCACG 
    ATGTATATAT ATATATGCCG TACGGATATT GTGAGCGTGA ATTCGATTCA 
    AAAAATGTGA TGTGGAAACG AGCAACAACA ATTTTTGTAT CTCTTGAGGA 
    CCCATAAGAC GTGCATGTCC ACTTATACCT AATGAGACAA TTCTGTCCTT 
    TTTTATAAGA GCATCTTCCA CAGCTTAATT TGCGAGCCTC ATTCACGTCA 
    ATATATAAGG GGTATGTGAT ACGGTAGATG GATTGATTAT TTACATCCAT 
    CTACATGTAA GTAGACCAGC ATACACCTTT TACATAGTGA CATAAAACCG 
    TAGAAATGCC CTCCGATTGA TCAAAAATGT TGGGACAGAA CAAAACCAAG 
    ATACCCCACC GGATCGTATC GGT

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 3564817 [Map]; Strand: c
      • AT3G11380.1 - [+] show detail - Pentatricopeptide repeat (PPR) superfamily protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT17086 - 5-prime edge 
    TCTAGCCTTT TGTTTAGAAC CGTCTCTCAC ATAAGCCTTT GCCATCGCAA 
    GCATTGTGAG CCCATCAAGG CTTGTAATCT CTTTCCTATC AACTCGAAGC 
    TTGTCCGTTG TCCCTACATC AGATACAGGG GCGTATACTC GCAAAGTGTG 
    GTTCACGGTG ACATTATCCA GCT

AT2G20562.1

Model type
Protein coding
Computational Description
unknown protein; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G31090.1); Has 70 Blast hits to 70 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 70; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G20570.1

Model type
Protein coding
Short Description
GBF's pro-rich region-interacting factor 1
Curator Summary
Encodes GLK1, Golden2-like 1, one of a pair of partially redundant nuclear transcription factors that regulate chloroplast development in a cell-autonomous manner. GLK2, Golden2-like 2, is encoded by At5g44190. GLK1 and GLK2 regulate the expression of the photosynthetic apparatus.
Computational Description
GBF's pro-rich region-interacting factor 1 (GPRI1); CONTAINS InterPro DOMAIN/s: Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-like DNA-binding domain, SHAQKYF class (InterPro:IPR006447), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: GOLDEN2-like 2 (TAIR:AT5G44190.1); Has 2420 Blast hits to 2125 proteins in 147 species: Archae - 0; Bacteria - 17; Metazoa - 163; Fungi - 64; Plants - 2094; Viruses - 12; Other Eukaryotes - 70 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G11380.1

Model type
Protein coding
Short Description
Pentatricopeptide repeat (PPR) superfamily protein
Computational Description
Pentatricopeptide repeat (PPR) superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT1G28020.1); Has 4044 Blast hits to 2539 proteins in 107 species: Archae - 0; Bacteria - 6; Metazoa - 8; Fungi - 2; Plants - 3964; Viruses - 0; Other Eukaryotes - 64 (source: NCBI BLink).
Link
InterPro Scan - TAIR