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GT17126

CSHL Arabidopsis genetrap mutant lines

Original: GT17126

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT17126

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 30034424 [Map]; Strand: w
      • AT1G79830.3 - [+] show detail - golgin candidate 5
        Distance: -523; Region: promoter
      • AT1G79830.4 - [+] show detail - golgin candidate 5
        Distance: -523; Region: promoter
      • AT1G79830.1 - [+] show detail - golgin candidate 5
        Distance: -630; Region: promoter
      • AT1G79830.2 - [+] show detail - golgin candidate 5
        Distance: -630; Region: promoter
    Flanking Genome Sequence: GT17126 - 3-prime edge
    CGTTTTCATC CCTAACCACA TATATACGTA TATTGGGATA TATATATACC 
    TTGAATCTTA CACATTTTGC TTACATCTAA AATAGAAAAT GAACCAGTAA
    TTAGTTTTTG TTTGGATCCA TAAATATCAC ATATATTACT TAATTATTTC
    ATATAATTTA TCACTCAAAT TACATTTCTG TATACCAGTT GTAGTATTTT
    AATGAATAAC TCTACTAGTA AATTGTAACA TTCAAACAGA AATAAAAATG
    AAAAATGTAA ACGTAAAGAT ATAATCGTGA TCTGAAATAG GATGGTTTAC
    AATACGTAAG AGAATACGAA TGTACATCAT GAGTATCAAA ACAAATCAAG
    ATTCATACCA AAAGGAAGAG AAAAAACATA TCAACATATG CATAGGTTAG
    CGTCTTAGCG AGCGTGCGGA ACCGAGGGTG CCTTGGTTTG CTGGCCCCAA
    AATGGGTGGG CTTTTAGGGG CCCAATATTG TTACTTACAG AGGCTAAAAT
    GGATCCTACT GTTTTCCCTT TACAAAAACC GGAGACAGGC CAGGTATATA
    AAAAATTCAG ACCAAAGCCG CTTAGAATGA AGTAAATGAT ATCAAGACAG
    AACGTTTTT
  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 30034535 [Map]; Strand: w
      • AT1G79830.3 - [+] show detail - golgin candidate 5
        Distance: -634; Region: promoter
      • AT1G79830.4 - [+] show detail - golgin candidate 5
        Distance: -634; Region: promoter
      • AT1G79830.1 - [+] show detail - golgin candidate 5
        Distance: -741; Region: promoter
      • AT1G79830.2 - [+] show detail - golgin candidate 5
        Distance: -741; Region: promoter
    Flanking Genome Sequence: GT17126 - 5-prime edge
    CTCACTAGCT AGTAGCTCTC TCACAACTGT GTCTTTTGGT TTTCATCAGC 
    TGATCCTCTC CAACTAACTA TCCATCTTTT GTTTTGCGGT TGGACTTGGA
    GGTACCAAGA ATATTAGCAA CGTACGACTC GTATGGTATC ATTTCCTTTG
    TACAAAAAGT GAATATCAAA ATGCATTGTA TTAATTATAT ATAAGTTAGT
    ATATGGAGTT AGTTGTCCTC ACTGTCTTTA TCTGGCGCAA TCTCCTATGC
    CACCATTCCC TCTTCACCAT ACGTGTGCAC ACTCGATGTC ACATTTGTAT
    AAACACGT

AT1G79830.1

Model type
Protein coding
Short Description
golgin candidate 5
Curator Summary
This gene is predicted to encode a protein that functions as a Golgi apparatus structural component known as a golgin in mammals and yeast. A fluorescently-tagged version of GC5 co-localizes with Golgi markers, and this localization appears to be replicated using the C-terminal (139 aa) portion of the protein. The C-terminal portion of the protein can also specifically interact with two members of the Rab family of GTPases (RabH1b and RabH1c).
Computational Description
golgin candidate 5 (GC5); FUNCTIONS IN: protein binding; INVOLVED IN: biological_process unknown; LOCATED IN: Golgi apparatus, nucleus, cytoplasm; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: TATA element modulatory factor 1 DNA binding (InterPro:IPR022092), TATA element modulatory factor 1 TATA binding (InterPro:IPR022091); Has 167116 Blast hits to 92088 proteins in 3687 species: Archae - 2004; Bacteria - 38214; Metazoa - 68462; Fungi - 14168; Plants - 9575; Viruses - 617; Other Eukaryotes - 34076 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G79830.2

Model type
Protein coding
Short Description
golgin candidate 5
Curator Summary
This gene is predicted to encode a protein that functions as a Golgi apparatus structural component known as a golgin in mammals and yeast. A fluorescently-tagged version of GC5 co-localizes with Golgi markers, and this localization appears to be replicated using the C-terminal (139 aa) portion of the protein. The C-terminal portion of the protein can also specifically interact with two members of the Rab family of GTPases (RabH1b and RabH1c).
Computational Description
golgin candidate 5 (GC5); FUNCTIONS IN: protein binding; INVOLVED IN: biological_process unknown; LOCATED IN: Golgi apparatus, cytoplasm; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: TATA element modulatory factor 1 DNA binding (InterPro:IPR022092), TATA element modulatory factor 1 TATA binding (InterPro:IPR022091); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G79830.3

Model type
Protein coding
Short Description
golgin candidate 5
Curator Summary
This gene is predicted to encode a protein that functions as a Golgi apparatus structural component known as a golgin in mammals and yeast. A fluorescently-tagged version of GC5 co-localizes with Golgi markers, and this localization appears to be replicated using the C-terminal (139 aa) portion of the protein. The C-terminal portion of the protein can also specifically interact with two members of the Rab family of GTPases (RabH1b and RabH1c).
Computational Description
golgin candidate 5 (GC5); FUNCTIONS IN: protein binding; INVOLVED IN: biological_process unknown; LOCATED IN: Golgi apparatus, cytoplasm; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: TATA element modulatory factor 1 DNA binding (InterPro:IPR022092), TATA element modulatory factor 1 TATA binding (InterPro:IPR022091).
Link
InterPro Scan - TAIR

AT1G79830.4

Model type
Protein coding
Short Description
golgin candidate 5
Curator Summary
This gene is predicted to encode a protein that functions as a Golgi apparatus structural component known as a golgin in mammals and yeast. A fluorescently-tagged version of GC5 co-localizes with Golgi markers, and this localization appears to be replicated using the C-terminal (139 aa) portion of the protein. The C-terminal portion of the protein can also specifically interact with two members of the Rab family of GTPases (RabH1b and RabH1c).
Computational Description
golgin candidate 5 (GC5); FUNCTIONS IN: protein binding; INVOLVED IN: biological_process unknown; LOCATED IN: Golgi apparatus, cytoplasm; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: TATA element modulatory factor 1 DNA binding (InterPro:IPR022092), TATA element modulatory factor 1 TATA binding (InterPro:IPR022091).
Link
InterPro Scan - TAIR