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GT17162

CSHL Arabidopsis genetrap mutant lines

Original: GT17162

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT17162

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 23384945 [Map]; Strand: w
    Flanking Genome Sequence: GT17162 - 3-prime edge 
    GTAGAGGTTT TTACCGACCG TTACCGACCG TTTATATATA CAGATAGACA 
    AAGTAACGTT TAGGTATTTC ACCTTTTCTT TTTCTTTTAA AGAAAAATGT 
    GATTATATTT CGATGAGAGT AGGAGTGAGT AGTACTACTC TTGACATAAT 
    ATATAGTCGT TGCATAAATA ATGGATTACT ACTATAAAAA AAAAAAACGC 
    CGTTTTTAAA AAAAAAGGCC CCAGTTTTGC CAATCCCATG GTTTTTAACC 
    CTTAAAATTT ATTTTAAATG AAGGATTAAC CAACTCTTGA AAAAAAGAAG 
    GAA

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 23385175 [Map]; Strand: w
      • AT3G63300.1 - [+] show detail - FORKED 1
        Distance: 0; Region: exon1 (CDS)
      • AT3G63300.2 - [+] show detail - FORKED 1
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: GT17162 - 5-prime edge 
    AAAAAAAACT CGTCTATCGG AAAGCCCGCG AGGCCCAATG GAGTTCTTGG 
    CTATAACCTG GAGTGTCTCT GCCTTGGAAG TCTCCAGAGC TCTCCACACC 
    GCCAAAGCAT TTTCCGCCAC CAACAGGCCT CCCTCATCCA TTAACACTCC 
    GATACCGGAA GAAACGCTAA ACCCTGAAAA AAAAAA

AT3G63300.1

Model type
Protein coding
Short Description
FORKED 1
Curator Summary
Encodes a pleckstrin homology domain- and DUF828-containing protein. Mutants have defects in leaf vascular pattering, with vascular bundles that fail to meet distally in both the cotyledons and leaves. Necessary to the formation of the closed leaf vascular pattern characteristic of dicot leaves in response to auxin. Redundant with FKD2. FKD1 may influence PIN1 localization in an auxin dependent manner. proposed to be a key component of the auxin canalization pathway.
Computational Description
FORKED 1 (FKD1); CONTAINS InterPro DOMAIN/s: Pleckstrin-like, plant (InterPro:IPR013666), Protein of unknown function DUF828 (InterPro:IPR008546); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region (TAIR:AT3G22810.1); Has 742 Blast hits to 348 proteins in 78 species: Archae - 0; Bacteria - 118; Metazoa - 127; Fungi - 51; Plants - 226; Viruses - 0; Other Eukaryotes - 220 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G63300.2

Model type
Protein coding
Short Description
FORKED 1
Curator Summary
Encodes a pleckstrin homology domain- and DUF828-containing protein. Mutants have defects in leaf vascular pattering, with vascular bundles that fail to meet distally in both the cotyledons and leaves. Necessary to the formation of the closed leaf vascular pattern characteristic of dicot leaves in response to auxin. Redundant with FKD2. FKD1 may influence PIN1 localization in an auxin dependent manner. proposed to be a key component of the auxin canalization pathway.
Computational Description
FORKED 1 (FKD1); CONTAINS InterPro DOMAIN/s: Pleckstrin-like, plant (InterPro:IPR013666), Protein of unknown function DUF828 (InterPro:IPR008546); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region (TAIR:AT3G22810.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR