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GT17172

CSHL Arabidopsis genetrap mutant lines

Original: GT17172

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT17172

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 16901628 [Map]; Strand: c
      • AT2G40460.1 - [+] show detail - Major facilitator superfamily protein
        Distance: 348; Region: intergenic
      • AT2G40470.1 - [+] show detail - LOB domain-containing protein 15
        Distance: 676; Region: intergenic
    Flanking Genome Sequence: GT17172 - 3-prime edge 
    TATTTTACCG ACCGTTACCG ACCGTTTTCA TCCCTATCTG TGGCCAATTA 
    TATCGATACT TTGGTGATTA ATTTACGAAA AAATTGTTTT TGTTGGGTCA 
    AATATTTAAT TTTCAAATTG GTTATTTTCT AACATTAATT TTATTTTGCC 
    ATTATGCAAA ACGGGTCCCC ACCGAAGAGG GGTTGCATGA ATCCGATCAG 
    CAAGAAGCTG GATTTTGATT AATTCGATAC GCAAAGGAAA CTCCGAAAAT 
    AAAAGTAAAG AAACCAAACT AAATG

AT2G40460.1

Model type
Protein coding
Short Description
Major facilitator superfamily protein
Computational Description
Major facilitator superfamily protein; FUNCTIONS IN: transporter activity; INVOLVED IN: oligopeptide transport, response to nematode; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Oligopeptide transporter (InterPro:IPR000109), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: peptide transporter 3 (TAIR:AT5G46050.1); Has 7555 Blast hits to 7238 proteins in 1401 species: Archae - 0; Bacteria - 3710; Metazoa - 634; Fungi - 431; Plants - 2228; Viruses - 0; Other Eukaryotes - 552 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G40470.1

Model type
Protein coding
Short Description
LOB domain-containing protein 15
Computational Description
LOB domain-containing protein 15 (LBD15); CONTAINS InterPro DOMAIN/s: Lateral organ boundaries, LOB (InterPro:IPR004883); BEST Arabidopsis thaliana protein match is: LOB domain-containing protein 13 (TAIR:AT2G30340.1); Has 1010 Blast hits to 1005 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 2; Plants - 1006; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR