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GT17195

CSHL Arabidopsis genetrap mutant lines

Original: GT17195

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT17195

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 8137987 [Map]; Strand: w
      • AT1G22985.1 - [+] show detail - Integrase-type DNA-binding superfamily protein
        Distance: -2067; Region: intergenic
      • AT1G22990.1 - [+] show detail - Heavy metal transport/detoxification superfamily protein
        Distance: -1178; Region: intergenic
    Flanking Genome Sequence: GT17195 - 5-prime edge
    TCCCTGCCCC AACGTACTTT CTCGTTCTTG TTATGTTTCG TTGTCGCTTT 
    GTTTATATTT CTTCTTATTT TAGGGGTTTT TTCAGTTCGA TTTTGTTTTG
    TTTTTAGTTA GCGGACGAAA ATATACAGAT GGTAGTACTA ACTTTTCTCC
    TAGCATTCTC ATCTATGTGT GTGTGTTATA CATTTATATC GGTGCTCTTG
    GTTGACCTTA GAAGGTACTT TATATATGGT TCGAGGGTCC ATATGGATAA
    GTTCAGATTA AACATCTAAA AGTGCATCTT GTGACCAAAA AAAAAAACTT
    TTCCTTTTTT AATGGCAAAA AAATTTTGGG GGGATTTTTT TTGCCCCAGG
    CATCCCCGTT GAAATGGGAA AAAAAAAAAG GGCGGGCCCC CCCCCCTTGG
    GGGGCAAAAT TCCCGGTCGA ATTTTAATTT TCAAAGGGGG GGCCCCTTTT
    GTTACCAAAA GGGGTTTTTT TTTTTTTTTT TGTGGGAAAG GTTTCCAAAA
    AAGGTTTTTT TCCAATATTT TGAAACCGGG GGGGCCCAAA AGCCCCTTTG
    GGGGGAACAA AAAAAAAATT AATCCTTTTA AAAAAATAAA AGGCCAAGGG
    GCAAAAAAAA AACCCCGGAG GGTTTTTTCC TTTGGAAAAA TTCCCGGGCT
    TGGGCAAAAA

AT1G22985.1

Model type
Protein coding
Short Description
Integrase-type DNA-binding superfamily protein
Curator Summary
encodes a member of the ERF (ethylene response factor) subfamily B-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 7 members in this subfamily.
Computational Description
Integrase-type DNA-binding superfamily protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: Integrase-type DNA-binding superfamily protein (TAIR:AT1G71130.1); Has 5644 Blast hits to 5509 proteins in 245 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 5631; Viruses - 2; Other Eukaryotes - 11 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G22990.1

Model type
Protein coding
Short Description
Heavy metal transport/detoxification superfamily protein
Computational Description
Heavy metal transport/detoxification superfamily protein ; FUNCTIONS IN: metal ion binding; INVOLVED IN: metal ion transport; LOCATED IN: cellular_component unknown; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis, C globular stage; CONTAINS InterPro DOMAIN/s: Heavy metal transport/detoxification protein (InterPro:IPR006121); BEST Arabidopsis thaliana protein match is: Heavy metal transport/detoxification superfamily protein (TAIR:AT1G71050.1); Has 1142 Blast hits to 1079 proteins in 46 species: Archae - 2; Bacteria - 2; Metazoa - 2; Fungi - 13; Plants - 1123; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR