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GT17205

CSHL Arabidopsis genetrap mutant lines

Original: GT17205

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT17205

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 8137762 [Map]; Strand: w
      • AT1G22985.1 - [+] show detail - Integrase-type DNA-binding superfamily protein
        Distance: -1842; Region: intergenic
      • AT1G22990.1 - [+] show detail - Heavy metal transport/detoxification superfamily protein
        Distance: -1403; Region: intergenic
    Flanking Genome Sequence: GT17205 - 5-prime edge
    TTTCTCCCTG TGCATGAATT AATATTCTAC GACCACAATT ACTTCTCTAA 
    TCTGGATTGA AAAATGGCCA CCGTATACAT TTCTTTAAAT AACGTTTTTC
    AAATTTTATT ATAAAATCTA GGGGACTACC ATATTATATT GTATAAACGT
    CCATATCCAT CTTAGAAATG TTATCAATAA TAGGTCTGGA AAATTTCATG
    GAACCACACC TATTTTGGAG CTGAATTCAA TCCCCCAACG TACTTTCTCG
    TTCTTGTTAT GTTTCGTTGT CGCTTTGTTT ATATTTCTTC TTATTTTAGG
    GGTTTTTTCA GTTCGATTTT GTTTTGTTTT TAGTTAGCGG ACGAAAATAT
    ACAGATGGTA GTACTAACTT TTCTCCTAGC ATTCTCATCT ATGTGTGTGT
    GTTATACATT TATATCGGTG CTCTTGGTTG ACCTTAGAAG GTACTTTATA
    TATGGTTCGA GGGTCCATAT GGATAAGTTC AGATTAAACA TCTAAAAGTG
    CATCTTGTGA CCAAAAAAAA AAACTTTCCC TTTTTAAATG GAAAAAAATT
    TTTGGGTGAA TTTTTTTGAC CCCAGCCATC CCCAATAAAT TGGAAAAAAA
    TAAAAGGGCG GGCCCCCCCG CATTGGGTGG CAAATTTCCC GTTCGAATTT
    CAATTTCCAA AGGGGG

AT1G22985.1

Model type
Protein coding
Short Description
Integrase-type DNA-binding superfamily protein
Curator Summary
encodes a member of the ERF (ethylene response factor) subfamily B-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 7 members in this subfamily.
Computational Description
Integrase-type DNA-binding superfamily protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: Integrase-type DNA-binding superfamily protein (TAIR:AT1G71130.1); Has 5644 Blast hits to 5509 proteins in 245 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 5631; Viruses - 2; Other Eukaryotes - 11 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G22990.1

Model type
Protein coding
Short Description
Heavy metal transport/detoxification superfamily protein
Computational Description
Heavy metal transport/detoxification superfamily protein ; FUNCTIONS IN: metal ion binding; INVOLVED IN: metal ion transport; LOCATED IN: cellular_component unknown; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis, C globular stage; CONTAINS InterPro DOMAIN/s: Heavy metal transport/detoxification protein (InterPro:IPR006121); BEST Arabidopsis thaliana protein match is: Heavy metal transport/detoxification superfamily protein (TAIR:AT1G71050.1); Has 1142 Blast hits to 1079 proteins in 46 species: Archae - 2; Bacteria - 2; Metazoa - 2; Fungi - 13; Plants - 1123; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR