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GT17206

CSHL Arabidopsis genetrap mutant lines

Original: GT17206

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT17206

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 10990069 [Map]; Strand: c
      • AT2G25760.2 - [+] show detail - Protein kinase family protein
        Distance: -1145; Region: intergenic
      • AT2G25770.1 - [+] show detail - Polyketide cyclase/dehydrase and lipid transport superfamily protein
        Distance: -2739; Region: intergenic
    Flanking Genome Sequence: GT17206 - 3-prime edge
    AAACGGTAGA GGATTTTACC GACCGTTACC GACCGTTTTC TCCATTAGGA 
    AAGCTTTTGC TGAACACATC CATTGGAATG TTAATCATCG ATTTGTGTTT
    GGAAGAGATG TTCAATTTGC ATCATGTGAT GAGGTCACAA TAGTGCATCA
    TAAACTATAT ATTCATAACT ATGTTTTGAG AAGAACAAAT CAAACTTAAA
    AAATCTGCAA TACGTGGAAA GATGTGAACA TGAAACATCT AAAGAATGGG
    TTGAACTATC TTTATATAGG AGAAAATAAT AATTTAACAT GTTTTCAAAA
    TATTTCGGAC TAACCTACCA ATTTTGCAGA TGACAATCTC TTTTTATGGA
    GAGTATCTTA TAATAAATGC AAGGATTTCT TTGAAGTGAT AGATATTTGT
    CATTTGGTAA TGTTTCAAGT CAGTGTATCA ATTTCCAAAA AATCACAGCT
    ATTTTGAAAA GATAACTTTT GTAGCGAGTG TAAACAGATA AATTATTCGA
    AATACGAGAA CACAAGGGTA GTCAAGTCTC ACATTTTGCT TATGTCCTCA
    GCCAACTTTA TAATCAAAGG ATAAGTGAGT TTTTATTGCG CTTGTTATTC
    TACATTTAAT GTCGTATGTC TATTTTTTTC TTATCCAAAA GATGTATGTA
    TAAAAGATAT ATAGGAGAGC ATGTAAGTAA CTTAGGAACA TGCTCTATTG
    AAATCTCAAG GTGATATTGG ATGATGCTAA TTAA
  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 8137757 [Map]; Strand: w
      • AT1G22985.1 - [+] show detail - Integrase-type DNA-binding superfamily protein
        Distance: -1837; Region: intergenic
      • AT1G22990.1 - [+] show detail - Heavy metal transport/detoxification superfamily protein
        Distance: -1408; Region: intergenic
    Flanking Genome Sequence: GT17206 - 5-prime edge
    CCTACTTTCT CCCCAGGTCA ACCCATAAAC AAGATCATGG TGAGGAAATC 
    TAGACGAACA CTCGAACCCC AACATTTTGT CGTGATCATT CATCTCACTC
    GACTAAAATT TTATTATAAA ATCTAGGGGA CTACCATATT ATATTGTATA
    AACGTCCATA TCCATCTTAG AAATGTTATC AATAATAGGT CTGGAAAATT
    TCATGGAACC ACACCTATTT TGGAGCTGAA TTCAATCCCC CAACGTACTT
    TCTCGTTCTT GTTATGTTTC GTTGTCGCTT TGTTTATATT TCTTCTTATT
    TTAGGGGTTT TTTCAGTTCG ATTTTGTTTT GTTTTTAGTT AGCGGACGAA
    AATATACAGA TGGTAGTACT AACTTTTCTC CTAGCATTCT CATCTATGTG
    TGTGTGTTAT ACATTTATAT CGGTGCTCTT GGTTGACCTT AGAAGGTACT
    TTATATATGG TTCGAGGGTC CATATGGATA AGTTCAGATT AAACATCTAA
    AAGTGCATCT TGTGACCAAA AAAAAA

AT1G22985.1

Model type
Protein coding
Short Description
Integrase-type DNA-binding superfamily protein
Curator Summary
encodes a member of the ERF (ethylene response factor) subfamily B-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 7 members in this subfamily.
Computational Description
Integrase-type DNA-binding superfamily protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: Integrase-type DNA-binding superfamily protein (TAIR:AT1G71130.1); Has 5644 Blast hits to 5509 proteins in 245 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 5631; Viruses - 2; Other Eukaryotes - 11 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G22990.1

Model type
Protein coding
Short Description
Heavy metal transport/detoxification superfamily protein
Computational Description
Heavy metal transport/detoxification superfamily protein ; FUNCTIONS IN: metal ion binding; INVOLVED IN: metal ion transport; LOCATED IN: cellular_component unknown; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis, C globular stage; CONTAINS InterPro DOMAIN/s: Heavy metal transport/detoxification protein (InterPro:IPR006121); BEST Arabidopsis thaliana protein match is: Heavy metal transport/detoxification superfamily protein (TAIR:AT1G71050.1); Has 1142 Blast hits to 1079 proteins in 46 species: Archae - 2; Bacteria - 2; Metazoa - 2; Fungi - 13; Plants - 1123; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G25760.2

Model type
Protein coding
Short Description
Protein kinase family protein
Computational Description
Protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: Protein kinase family protein (TAIR:AT3G13670.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G25770.1

Model type
Protein coding
Short Description
Polyketide cyclase/dehydrase and lipid transport superfamily protein
Computational Description
Polyketide cyclase/dehydrase and lipid transport superfamily protein; CONTAINS InterPro DOMAIN/s: Polyketide cyclase/dehydrase (InterPro:IPR019587); BEST Arabidopsis thaliana protein match is: Polyketide cyclase/dehydrase and lipid transport superfamily protein (TAIR:AT4G32870.1); Has 173 Blast hits to 173 proteins in 49 species: Archae - 0; Bacteria - 50; Metazoa - 0; Fungi - 0; Plants - 119; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).
Link
InterPro Scan - TAIR