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GT17220

CSHL Arabidopsis genetrap mutant lines

Original: GT17220

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT17220

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 8137940 [Map]; Strand: c
      • AT1G22985.1 - [+] show detail - Integrase-type DNA-binding superfamily protein
        Distance: -2020; Region: intergenic
      • AT1G22990.1 - [+] show detail - Heavy metal transport/detoxification superfamily protein
        Distance: -1225; Region: intergenic
    Flanking Genome Sequence: GT17220 - 3-prime edge
    TGGAACCACA CCTATTTTGG AGCTGACTTC AATCCCCCGA CGTACTTTCT 
    CGTTCTTGGT ATGGATCGTT GGCGCTCTGG TAATATAGCT GCTTATTTTA
    GGGGGTTTTC CAGTCCGATT CTGTTTGGAG GTAAGTGAGC GGATGAAAAT
    ATCCAAACGG GAGGACTAAC TTTTCTCCTA CCATTCTCAT CTATGTGTGT
    GTGTTATACA TTTATATCGG GGCTCTTGGT TGACCTTAGA AGGTACTTTA
    TATATGGATC GAGGGTCCAT ATGCGAAAGT TCAGATTAAA CATCTAAAAG
    CGCATCTT
  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 15971944 [Map]; Strand: c
      • AT4G33100.1 - [+] show detail - CONTAINS InterPro DOMAIN/s: Mitochondrial distribution/morphology family 35/a...
        Distance: 0; Region: intron2 (CDS)
    Flanking Genome Sequence: GT17220 - 5-prime edge
    CCTACTTTCT CCCTGTTTTG GACAGACAGA TAAATACACC AACCAAAGGG 
    AAGAATTAGA AAGGAAAAAG GAATAAGACA ATGCCATCCA AATGGTCCAA
    ACCTTTCAAA AGACCAGAAA TGAAATCCCT GAAAAAAATA CCCATTTGGC
    TAACCAAAGC TAAACCCTTA AACCCAGCAA CTAGCTAAAT CCATCAAAAG
    GAGAAACAAA CGAAACTCAC TTGTTGAAGC AATTGTGGTA AGCGTTTCGC
    AAATCGGCGC AGGGAGAAGT AGAGGAGCGA GCTGAAGTTG AATCTTTTTT
    CTTCAATAAG CCCATTGTCG TTGCAATCAC CACTAATACT CTGTCCCACC
    TTAGCAACTC TGAAAATCCA TCTATCTATA ATTCAGAAGA AAAAAAAACC
    TATATCATCA CTCTTAAGAA AAGGATAAAA ATGTAAACAG TGAGACAATA
    TGAATCTAAC ACAACAACAA GCTTCAGAAT TCATCACAAA CAGAGAAATA
    TAATCCAAGA TGACCAAAAG ACAACTAAAA GATTCATTTT TGATACTCTA
    AAAATATAAA TGAACATAAC CAAAGTTGCA GAAAGAATCA AATAGAGAGA
    TTGTATCAAA AATGAAACTC AGACAATGCA AAGTTTTAAG AAGTATGAAG
    CTTTTCAAGG

AT1G22985.1

Model type
Protein coding
Short Description
Integrase-type DNA-binding superfamily protein
Curator Summary
encodes a member of the ERF (ethylene response factor) subfamily B-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 7 members in this subfamily.
Computational Description
Integrase-type DNA-binding superfamily protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: Integrase-type DNA-binding superfamily protein (TAIR:AT1G71130.1); Has 5644 Blast hits to 5509 proteins in 245 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 5631; Viruses - 2; Other Eukaryotes - 11 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G22990.1

Model type
Protein coding
Short Description
Heavy metal transport/detoxification superfamily protein
Computational Description
Heavy metal transport/detoxification superfamily protein ; FUNCTIONS IN: metal ion binding; INVOLVED IN: metal ion transport; LOCATED IN: cellular_component unknown; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis, C globular stage; CONTAINS InterPro DOMAIN/s: Heavy metal transport/detoxification protein (InterPro:IPR006121); BEST Arabidopsis thaliana protein match is: Heavy metal transport/detoxification superfamily protein (TAIR:AT1G71050.1); Has 1142 Blast hits to 1079 proteins in 46 species: Archae - 2; Bacteria - 2; Metazoa - 2; Fungi - 13; Plants - 1123; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G33100.1

Model type
Protein coding
Computational Description
CONTAINS InterPro DOMAIN/s: Mitochondrial distribution/morphology family 35/apoptosis (InterPro:IPR007918); Has 214 Blast hits to 214 proteins in 102 species: Archae - 0; Bacteria - 0; Metazoa - 110; Fungi - 69; Plants - 29; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).
Link
InterPro Scan - TAIR