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GT17227

CSHL Arabidopsis genetrap mutant lines

Original: GT17227

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT17227

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 107888 [Map]; Strand: w
      • AT2G01180.1 - [+] show detail - phosphatidic acid phosphatase 1
        Distance: 0; Region: exon2 (CDS)
      • AT2G01180.2 - [+] show detail - phosphatidic acid phosphatase 1
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT17227 - 3-prime edge 
    GTATTTTACC GACCGTTACC GACCGTTTTC ATCCCTAACA ACACCGTACC 
    TATCTGGTCT GTCCCTGTGT ACGCTGTGCT TCTTCCCATC ATAGTGTTCG 
    TCTGCTTCTA CCTGAAGAGG ACATGTGTGT ACGATCTGCA CCACAGCATC 
    CTCGGGCTGC TCTTCGCCGT CTTGATAACT GGTGTCATCA CTGACTCCAT 
    CAAGGTAGCC ACCGGACGCC CTCGTCCTAA CTTCTACTGG CGCTGCTTCC 
    CCGACGGCAA AGAGCTGTAT GATGCGTTGG GAGGTGTGGT ATGCCACGGC 
    AAGGCAGCTG AGGTCAAGGA AGGCCACAAG AGCTTCCCGA GCGGACACAC 
    TTCCTGGTCC TTTGCGGGGC TTACATTCCT TTCCCTTTAC CTCTCTGGCA 
    AAATCAAGGC CTTCAACAAT GAAGGACATG TGGCTAAACT CTGCCTCGTG 
    ATCTTCCCTC TGCTTGCCGC TTGTCTTGTG GGGATATCTC GTGTGGATGA 
    CTACTGGCAC CACTGGCAAG ATGTCTTCGC AGGAGCTCTC ATTGGCACCC 
    TTGTAGCCGC CTTCTGCTAC CGTCAGTTCT ACCCCAACCC TTACCACGAA 
    GAAGGATGGG GTCCCTACGC CTATTTCAAG GCAGCTCAAG AACGAAGAGT 
    CCCTGTGACC TCCTCCCAAA ACGGAGATGC CTTGAGGGCT ATGTCTCTGC 
    AGATGGATTC ACATCTCT

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 107963 [Map]; Strand: w
      • AT2G01180.1 - [+] show detail - phosphatidic acid phosphatase 1
        Distance: 0; Region: exon2 (CDS)
      • AT2G01180.2 - [+] show detail - phosphatidic acid phosphatase 1
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT17227 - 5-prime edge 
    CTTTCTCCCT GCCCTTGAAA GGTACTTGAG GTCAGTCATC ATGTCTTTTC 
    CCACGTAGCG GTAGAAAGGA GAGATGAGGT TCAAGCCTAT CTCGATGGCA 
    ATCAAGATGA CGAGTATGAT CCAATCGTGC TTGTGTTTAG AAGCGACTCT 
    TCCTCCATGG GACTTTATAG TGTGAACACT AAGATCTATC TCCTGCATCC 
    TCCCTCTCTG CGCCTCCTGG TCCTGCCACC AAAAACACAA ACAATCATCA 
    CAGTCAACTA AACCTTCTTC TAATTGGATC TAAACAAACA ATTCATGGGC 
    TCTCTAAGAA ATACTACTTG AGGGTTAGGG CTTGACATCT CCGGTTTGGA 
    TGATAGTAAC AACGGAATGC AATTCATTCT ATCGGATGAA CAAATTGGTT 
    TAGGCAAACA AAGAACTTTG TCAAAGACAC GACAACACTT TGCTCTACGG 
    ATCCAGACAC TTTTTGTCTG TCTGATTCGT TATGCTAAGC ACACCACTGT 
    TTCATTAACA ATGTTTTCGT TGACTCTATT TAACTACTTT ATTTTCAATG 
    TTAGGATTTT TAAAATGATA AAGAAAAAAG GAGTAGAACA GAGAATAGTC 
    GATTGAGGTT ACCTGAGAAT TGCGCCAGAA TAAGAGAGAA GAGAAAAACG 
    ACCCTATTGT CATCAGAAAG TGAAGATCTC GACTAAGAGA TGAGATGAGG 
    TTAAAAAGAA ATGTGGATCT CGAAACTTAG GAGTAAAACA GAGGAATTTG 
    ATCTACGAAG ACTATAGATA AATAGTCCGA TGAGGA

AT2G01180.1

Model type
Protein coding
Short Description
phosphatidic acid phosphatase 1
Curator Summary
Encodes phosphatidate phosphatase. Up-regulated by genotoxic stress (gamma ray or UV-B) and elicitor treatments with mastoparan and harpin. Expressed in roots and leaves.
Computational Description
phosphatidic acid phosphatase 1 (PAP1); FUNCTIONS IN: phosphatidate phosphatase activity; INVOLVED IN: phospholipid metabolic process, response to stress; LOCATED IN: plasma membrane, integral to plasma membrane; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Phosphatidic acid phosphatase/chloroperoxidase, N-terminal (InterPro:IPR016118), Phosphatidic acid phosphatase type 2/haloperoxidase (InterPro:IPR000326); BEST Arabidopsis thaliana protein match is: lipid phosphate phosphatase 3 (TAIR:AT3G02600.1); Has 2118 Blast hits to 2110 proteins in 392 species: Archae - 9; Bacteria - 357; Metazoa - 920; Fungi - 399; Plants - 198; Viruses - 3; Other Eukaryotes - 232 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G01180.2

Model type
Protein coding
Short Description
phosphatidic acid phosphatase 1
Curator Summary
Encodes phosphatidate phosphatase. Up-regulated by genotoxic stress (gamma ray or UV-B) and elicitor treatments with mastoparan and harpin. Expressed in roots and leaves.
Computational Description
phosphatidic acid phosphatase 1 (PAP1); FUNCTIONS IN: phosphatidate phosphatase activity; INVOLVED IN: phospholipid metabolic process, response to stress; LOCATED IN: plasma membrane, integral to plasma membrane; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Phosphatidic acid phosphatase/chloroperoxidase, N-terminal (InterPro:IPR016118), Phosphatidic acid phosphatase type 2/haloperoxidase (InterPro:IPR000326); BEST Arabidopsis thaliana protein match is: lipid phosphate phosphatase 3 (TAIR:AT3G02600.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR