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GT17245

CSHL Arabidopsis genetrap mutant lines

Original: GT17245

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT17245

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 301565 [Map]; Strand: c
      • AT4G00730.1 - [+] show detail - Homeobox-leucine zipper family protein / lipid-binding START domain-containin...
        Distance: 0; Region: intron6 (CDS)
      • AT4G00730.2 - [+] show detail - Homeobox-leucine zipper family protein / lipid-binding START domain-containin...
        Distance: 0; Region: intron6 (CDS)
    Flanking Genome Sequence: GT17245 - 3-prime edge 
    AACGGTAGAG GTATTTTACC GACCGTTACC GACCGTTTTC ATCCCTAATG 
    AAATTAATGT GTTCTTTCCA AAATGCGCAC AAATAAATTT GGACAGATGC 
    TTCTTGGGAA ATAGATATCA AAATACTAAT AACATAAATA AATATGAGTT 
    TTTTCGATTT TGGAAACGGA CCCATTTGTC GAAAACTTGA AATCTAATCC 
    AGAGAATCCG ACAGAAAGAG AAGCATCCGG ATCCATAAAA TTTTAGCAAT 
    CTCGGAAGGT TCGGGGATCA AAATTCGAGG AAGAAAATGC CTATTCAAAT 
    CATTTTCTTA TTCTGACATA AAATCAGATT ATAAAAAGGA AAATAATACC 
    GTTTGAGAGA GAAGACTAAT TAAAAATTTA GGAGAAAAAC AAAGACTAGA 
    GAAAGATCAA ATTTGGAGAA GTAAGATTAA AAAAAAAA

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 301454 [Map]; Strand: c
      • AT4G00730.1 - [+] show detail - Homeobox-leucine zipper family protein / lipid-binding START domain-containin...
        Distance: 0; Region: intron6 (CDS)
      • AT4G00730.2 - [+] show detail - Homeobox-leucine zipper family protein / lipid-binding START domain-containin...
        Distance: 0; Region: intron6 (CDS)
    Flanking Genome Sequence: GT17245 - 5-prime edge 
    TAAATAAATC AATTTTTGAT GTTTCTATTC CTTTCTTCCA TGCGGCCTCG 
    GATAGCCCGT CTCTATCATC TTCAAATAGT ATAGTAAAAT ATAGATTTCA 
    ATTGTCTTAT TATCTTGAAT TTTTATCCTA TTAGCTTCTA TTAAAAATTA 
    ACATATTATC TCATCGTGCA AGTGGATTTT TAAGTAGACC GTGTTTTGGT 
    TGGTTTGCTT GTTCATATGG ATTTGATTTC CGGGTTGTGC AGGTCACGTG 
    GGTGGAGCAT GCAGAATACG ACGAGAACCA AATCCACCAG CTGTACAGGC 
    CGTTGCTACG GTCAGGCCTT GGTTTTGGCT CTCAAAGATG GCTCGCTACA 
    CTTCAGAGAC AGTGCGAGTG TCTCGCCATC CTCATGTCTT CCTCCGT

AT4G00730.1

Model type
Protein coding
Short Description
Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein
Curator Summary
Encodes a homeodomain protein of the HD-GLABRA2 group. Involved in the accumulation of anthocyanin and in root development
Computational Description
ANTHOCYANINLESS 2 (ANL2); FUNCTIONS IN: transcription regulator activity, sequence-specific DNA binding transcription factor activity; INVOLVED IN: root development, anthocyanin accumulation in tissues in response to UV light; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Homeobox (InterPro:IPR001356), Homeobox, conserved site (InterPro:IPR017970), Homeodomain-like (InterPro:IPR009057), Lipid-binding START (InterPro:IPR002913), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: homeodomain GLABROUS 1 (TAIR:AT3G61150.1); Has 12660 Blast hits to 12608 proteins in 595 species: Archae - 0; Bacteria - 0; Metazoa - 9962; Fungi - 223; Plants - 2228; Viruses - 1; Other Eukaryotes - 246 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00730.2

Model type
Protein coding
Short Description
Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein
Curator Summary
Encodes a homeodomain protein of the HD-GLABRA2 group. Involved in the accumulation of anthocyanin and in root development
Computational Description
ANTHOCYANINLESS 2 (ANL2); FUNCTIONS IN: transcription regulator activity, sequence-specific DNA binding transcription factor activity; INVOLVED IN: root development, anthocyanin accumulation in tissues in response to UV light; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Homeobox, conserved site (InterPro:IPR017970), Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057), Lipid-binding START (InterPro:IPR002913), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: homeodomain GLABROUS 1 (TAIR:AT3G61150.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR